Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02388 ATGAGTTCGGGAAGCCATAGTGATAAGGAGAAGGAGAAGGAGAAGCAGAGGGTGAGCCGCACGTCGTTGATACTGTGGCATGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTGCAGGAGGATCCTTCGCTGGTGACGGCAAGGGATTACGACAACCGCACCCCGCTCCACGTCGCATCCCTCCATGGCTGGATCGACGTCGCTAAGTGTTTGATCGAGTTCGGCGCCGATGTCAACGCGCAAGATCGTTGGAAAAACACCCCTCTGGCGGATGCCGAAGGAGCTAAGAAGACTGATGTGATCGAGCTTTTGCAATCTCATGGAGGCTCGTCTTATGGGCAAACTGGTAGCCATTTTGAACCGAAGCCTGTTCCGCCACCGTTGCCAAATAAGTGTGACTGGGAAATCGAACCTACCGAGCTTGACTTCTCCACCTCCACGAGAATTGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGATAGATTGGTGATAATTAGGAAAGTGATGGGTCTAAGGTTACACAAGTCTACAGAAGAAGGAAAAGTAGAGCTGAGGGCAAAGTGGGAAATGTGGAAGAGGCACATGGGTGTAACTAACTGGACACGTGTCTTGCTGAGAGGGGAGGGGAGTATATTGGTGGGGATTTGGAGGTGA 717 0.5132 MSSGSHSDKEKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVTARDYDNRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKTDVIELLQSHGGSSYGQTGSHFEPKPVPPPLPNKCDWEIEPTELDFSTSTRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIIRKVMGLRLHKSTEEGKVELRAKWEMWKRHMGVTNWTRVLLRGEGSILVGIWR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02388 238 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Vimu11g02388 238 SUPERFAMILY Protein kinase-like (PK-like) 128 184 IPR011009 -
Vimu11g02388 238 Gene3D Phosphorylase Kinase; domain 1 129 214 - -
Vimu11g02388 238 FunFam serine/threonine-protein kinase STY46-like 138 210 - -
Vimu11g02388 238 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Vimu11g02388 238 Gene3D - 2 122 IPR036770 -
Vimu11g02388 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIB2 20 111 - -
Vimu11g02388 238 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vimu11g02388 238 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vimu11g02388 238 SUPERFAMILY Ankyrin repeat 24 115 IPR036770 -
Vimu11g02388 238 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Vimu11g02388 238 Pfam Ankyrin repeats (3 copies) 20 84 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02388 Vimu-Chr11 41572681 41574392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02388 10 185 MAP Kinase Kinase Kinase AT1G14000 85.227 1.48e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02388 - - gmx:100815995 334.724