LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02388	ATGAGTTCGGGAAGCCATAGTGATAAGGAGAAGGAGAAGGAGAAGCAGAGGGTGAGCCGCACGTCGTTGATACTGTGGCATGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTGCAGGAGGATCCTTCGCTGGTGACGGCAAGGGATTACGACAACCGCACCCCGCTCCACGTCGCATCCCTCCATGGCTGGATCGACGTCGCTAAGTGTTTGATCGAGTTCGGCGCCGATGTCAACGCGCAAGATCGTTGGAAAAACACCCCTCTGGCGGATGCCGAAGGAGCTAAGAAGACTGATGTGATCGAGCTTTTGCAATCTCATGGAGGCTCGTCTTATGGGCAAACTGGTAGCCATTTTGAACCGAAGCCTGTTCCGCCACCGTTGCCAAATAAGTGTGACTGGGAAATCGAACCTACCGAGCTTGACTTCTCCACCTCCACGAGAATTGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGATAGATTGGTGATAATTAGGAAAGTGATGGGTCTAAGGTTACACAAGTCTACAGAAGAAGGAAAAGTAGAGCTGAGGGCAAAGTGGGAAATGTGGAAGAGGCACATGGGTGTAACTAACTGGACACGTGTCTTGCTGAGAGGGGAGGGGAGTATATTGGTGGGGATTTGGAGGTGA	717	0.5132	MSSGSHSDKEKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVTARDYDNRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKTDVIELLQSHGGSSYGQTGSHFEPKPVPPPLPNKCDWEIEPTELDFSTSTRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIIRKVMGLRLHKSTEEGKVELRAKWEMWKRHMGVTNWTRVLLRGEGSILVGIWR	238

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g02388	238	ProSiteProfiles	Ankyrin repeat profile.	53	85	IPR002110	GO:0005515
	Vimu11g02388	238	SUPERFAMILY	Protein kinase-like (PK-like)	128	184	IPR011009	-
	Vimu11g02388	238	Gene3D	Phosphorylase Kinase; domain 1	129	214	-	-
	Vimu11g02388	238	FunFam	serine/threonine-protein kinase STY46-like	138	210	-	-
	Vimu11g02388	238	ProSiteProfiles	Ankyrin repeat region circular profile.	53	85	-	-
	Vimu11g02388	238	Gene3D	-	2	122	IPR036770	-
	Vimu11g02388	238	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MIB2	20	111	-	-
	Vimu11g02388	238	SMART	ANK_2a	53	82	IPR002110	GO:0005515
	Vimu11g02388	238	SMART	ANK_2a	86	115	IPR002110	GO:0005515
	Vimu11g02388	238	SUPERFAMILY	Ankyrin repeat	24	115	IPR036770	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02388	Vimu-Chr11	41572681	41574392	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02388	10	185	MAP Kinase Kinase Kinase	AT1G14000	85.227	1.48e-99	295

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02388	-		-	gmx:100815995	334.724

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