Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02387 ATGATGAAGATGATGGCAGATCGTTTGGAAGAGACAATAGGGGAGATGCGGGTGTGGAGGAGAGAGGTAGAGGGAGACACCGTTCACCGGAGGGATAGTTACAGGGAGGAAGAATCAAGGAGGGAAGCGCGTGTCAAGCGCGTGGAGGTTGACACCACGGTGGTTTGCCTTGAGGGGAAGGCTCTAAACTGGTACCAGTGGTGGGAGTCCAGAATGGTGGTCGCAGTGACGTGGCAGATGTTTCGGCAGGCTCTCATGGGGCGGTTTCAGGTGGCTTCATCTGAAAACCCGTATGAGGTGTTGATGGGGTTGAGGCAGAGAGGATCGGTGCTGGAGTACCGGGAACAATTTGAGTTGCGATCTGCTCCTCTTCGTTTTGCTGATGAGGAATTCATGAAGGGAGTGTTTATGAACGGGTTGAAGGAAGACATCAAGGCGGAGGTCAGGTTGATGGGTTCTGGTGATCTCCATGTGTTAATGGAGGTGGCTCAAAAGGTTGAAGAAAGGAACCGGGTTTTGGGACGCAGCATGGGCTTTGCGGGTCGGGGAAGTGGACCGGGTATGACCCGGTCCGCATTACCTAATAGATGGGCTGGCCCAAGTGAAACTAAAGAGTGGGCGGTTGGGCCCAATTTCTCACAAGGGGGATCAATACATCAGAAGCAGTTAGGAGGGAAAGGTGAGAACGCTCATTCCAAATCCCCAACGTTTTCTCGTGAAGGAAGCACATCCAGTTCTAACCGTCGTGGCATGGGATACAAAAGGCTGACGAAAGAGGAGGAGAATGAGAAAAGACGAAGGGGGCTCTGTTTTCGTTGTGATGAACGCTATAGCCCTGGACACGTGTGTCGTAACAAGCAACTTCATGTGATTCTGCTTGGCCAGGAAGAAGGAGTCGAGGAGGATGAGGCCCCATCTGAGAAAGAAGAGGGAGACGAAGTCAATTTGCAGTTGAATGTGAGCAGCATTGCGGGTATGACTTCAAAAAATTCTTTGAAGCTTTGGGGCACTATCAAGGGGAACAAGGTGATTGTCATGGTTGATTCAGGTGCATCACATAATTTTCTGTCTCCCAGAGTTGTTGGCGAATTGGGTATACAAATAGAAGAGACCAAAGGGTATTTTGTGGAAGTTGGCAATGGACAGCGGTTGGGAAGCCAAGGTGTTTGTAGAAATGTCGAGTTACAGCTTCCTACACTAATGGTGAAACAAGACTTCTACCTATTTGAGTTAGTAGGTGTTGATGTAATTCTGGGCTATGAATGGTTGAAGAGCTTGGGCAAATTCAGTGCAGATTTGGGTAAACACTTGTTGGAAATTCAGGGGGATGGGACGATCATTGAGGTTCGTGGAGATCCGGTTCTGTCCAGAACAGTGGCGTCCTTGAAGGCAGTAATGAAGGAACTGAGAAATGAGGGTGAGGCGTACTATGTTGAGTTGGGGATGATGAGCATGTGGGTTCCTTCCAATTGGGACACGCCTATTAGTGTACAGCAACTGGTGGAAGAGTATGCTGATCTCTTTCAGGAACAGAGAGGGCTTCCCCCGCGGAGAAGTTGTGATCATGCTATAGTTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAACTTCGACACCCAAATATAGTTCAGTTTCTTGGAGCTGTCACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGATAAAGGTGCACTTAGTCCAGCAACAGCTATCAACTTTTCCATGGATATTGTGAGAGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATACTAGTGCCGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACCGGTGAAACTGGGAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAATCTCGAGCCTTATGATGGAGCAAAACGTGCTGCTGAGGGTCAAAGGCCTTCATTTCGGTCAAAGGGTTATATCAATGAATTGCAAGAATTAACGGAGCAGTGTTGGGCTCATGACATGAATCAGAGACCACCCTTCTTAGAGATCCTTAAACGTCTTGAAAAGATCAAGGAGAATTTACATTCAGATCATCACTGGCATTTGTTTGCATCATAG 2286 0.4681 MMKMMADRLEETIGEMRVWRREVEGDTVHRRDSYREEESRREARVKRVEVDTTVVCLEGKALNWYQWWESRMVVAVTWQMFRQALMGRFQVASSENPYEVLMGLRQRGSVLEYREQFELRSAPLRFADEEFMKGVFMNGLKEDIKAEVRLMGSGDLHVLMEVAQKVEERNRVLGRSMGFAGRGSGPGMTRSALPNRWAGPSETKEWAVGPNFSQGGSIHQKQLGGKGENAHSKSPTFSREGSTSSSNRRGMGYKRLTKEEENEKRRRGLCFRCDERYSPGHVCRNKQLHVILLGQEEGVEEDEAPSEKEEGDEVNLQLNVSSIAGMTSKNSLKLWGTIKGNKVIVMVDSGASHNFLSPRVVGELGIQIEETKGYFVEVGNGQRLGSQGVCRNVELQLPTLMVKQDFYLFELVGVDVILGYEWLKSLGKFSADLGKHLLEIQGDGTIIEVRGDPVLSRTVASLKAVMKELRNEGEAYYVELGMMSMWVPSNWDTPISVQQLVEEYADLFQEQRGLPPRRSCDHAIVQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKDKGALSPATAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNTSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFANLEPYDGAKRAAEGQRPSFRSKGYINELQELTEQCWAHDMNQRPPFLEILKRLEKIKENLHSDHHWHLFAS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02387 761 FunFam Integrin-linked protein kinase family 564 759 - -
Vimu11g02387 761 SUPERFAMILY Protein kinase-like (PK-like) 521 755 IPR011009 -
Vimu11g02387 761 Pfam Protein tyrosine and serine/threonine kinase 522 743 IPR001245 GO:0004672|GO:0006468
Vimu11g02387 761 Gene3D Acid Proteases 320 447 IPR021109 -
Vimu11g02387 761 Gene3D Transferase(Phosphotransferase) domain 1 510 752 - -
Vimu11g02387 761 SMART serkin_6 435 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02387 761 MobiDBLite consensus disorder prediction 201 260 - -
Vimu11g02387 761 MobiDBLite consensus disorder prediction 227 251 - -
Vimu11g02387 761 CDD retropepsin_like 334 424 - -
Vimu11g02387 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Vimu11g02387 761 CDD STKc_MAP3K-like 517 743 - -
Vimu11g02387 761 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 494 748 - -
Vimu11g02387 761 Pfam Retrotransposon gag protein 54 142 IPR005162 -
Vimu11g02387 761 FunFam serine/threonine-protein kinase STY46-like 512 564 - -
Vimu11g02387 761 Pfam Retroviral aspartyl protease 338 425 - -
Vimu11g02387 761 ProSiteProfiles Protein kinase domain profile. 435 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02387 761 SUPERFAMILY Acid proteases 331 427 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02387 Vimu-Chr11 41562632 41572302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02387 493 761 MAP Kinase Kinase Kinase AT1G14000 75.093 6.17e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vimu11g02387 PK_Tyr_Ser-Thr 3.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02387 - - gmx:100793237 454.907