Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02383 ATGGCTGACGTCAACAACAAGCCTTTGGAGAGTCGAACCACTGTTTCCGGAACTCAGACGGTCTTTGCAAAATCTCTTCCGGACGTGTCACAAGTCGAGGTTTTCTTTGGTCAAAACTTCTGGTGTTGGCAAGAACGTGTGTCCACCTTTTTAGACGTGTATGGATTTGTTGCTGCTCCTAAAAGGTACGCACAAAAACCTGATCACAAAAAGAAAAATAATTTTCTTAAATCCCATCCCAATGAATCTAATCCCACCTGGCATAGAGTAAGAAACGACAATCATCCTAGGGCAAATATAGCCGAAGGAGATGACATTATTGTTGCGGTCGTTTCTCAAGCAAATTTGATGACCAATGTGAGCAAGTGGGTGGTAGACTCTGGTGCTACCAGGCATATCTGTGCAAACAGAAGTGCCTTTACCTCTTACACTAGTGTAGGGGATGGAGAAGAACATGACCACTCCTGTTCTGGAAAAGGGAAAGTTCTTCTCAAACTCACATCTGGAAAGACTTTGGCCTTGAGTGATGTGCTACATGTGCCATCCATCAGAGTTAATTTAATTTTTGTGGCACTATTGGGAAAAGTGGGGGTTAGAGTGTCATTTGAGTCTGACAAGATCATTATGACAAAAAATAATGTTTTTGTGGGGAAGGGATATTGTGATCAAGGTCTCTTTATACTTAATATTTCTGGAAATATTAATGAATCGTCTTCTTCTGCTTATATTGTTGACTCGTATGATATATGGCATGCTAGATTAGGACATATGAATTGCTCGTATGTTTTGAAATTACAACGACTAGGATTTATTAATATGCATGATAAACAGAGTAGTAAATGTGATATATGTGTAGAATCTAAATTAACAAAGAAATCATGTTTTTCTGTAGAACGCCAAACTGAACTGTTAGGGTTAATTCATACTGATCTAGCTGATATGAAACAAACAATGTCGAGAGGAGGTAAAAATTATTTTGTGACCTTTGTAGATGATTATTCTAGATACACCAAAGTTTACTTAATCAAACATAAAGATGAAGCCTTTGATGTGTTTTTAACCTATAAAGCAGAAGTAGAAAATCAATTGAATAAGAAAATTAAGAGGATCAAATCAGATAGAGGTGGTGAGTATGTTTTGTTTAATGACTATTGTTTTAAAGAAGGGATTATCCATGAAGTGACTCCACCATATTCACCCGAGTCTAATGGAGTAGCTGAGAGGAAAAATAGAACCCTTAAGGAAATGATGAATGCTATGCTTGTTAGTTCTAGTGCACCTGATAACCTTTGGGGAGAAGCCTTGCTTACTGCATGCTTTTTACAAAATAGGATACCCCATAAGAAAACCGGTAAAACTCCTTATGAGTTGTGGAAAGGTTACCAACCTAACCTTAAATATCTAAGAGTGTGGGGGTGCCTAGCTAAGGTAATGTTACCCGATCCTAAGAAAAGGAAAATAGGCTCTAAAACCGCTGATTGCATGTTCTTAAGTTATGTTGAACATAGTGCTGCCTACAGGTTTCTAGTTGTTAAAAGTAACATACTTGAGAGAAATTCTATAATGGAGACGAAAAATGCTGAGTTTTTTGAACATGTGTTTCCCTTAAAGGTTAGTGAGATGTCTCAACCCATTGATGATAATGATGATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAGTGATATCATGAATGAGGACTTAAGAAGAAGTAAAAGACAGAGAAAAGAAACTTCCTTTGGAGATGACTTTTATACTTATCTTGTTGATAGTGATCCAACAAACTTTGTAGAAGCTACTAATGCTCCTGATTCAAAACAGTGGGATAAGGCCATTAGGATTGAAATTGAATCAATTCAGAAAAACAATACTTGGACTTTAGTAGATTTGCCTAAGGGAGTAAAACCCATAGGTTGTAAATGGATCTTTAAGAAGAAGTATCATCCTGATGGATCCATAGAGAAATATAAGGCAAGATTAGTAGCAAAAGGATTTACTCAAAAACCCAACATAGATTACTTTGATACTTTTGCTCCTGTGACTAGGATTTCCTCTATTCGAGTGTTATTAGCTTTAGCAGCTATCCATAAACTAGTAATACATCAGATGAATGTTAAAACAGCCTTTCTGAATGGTGATTTAGAGGAAGAAATTTATATGACTCAACCTGAAGGGTGTGTCGTACCTGGTCAAGAGAATAAGGTATGTAAACTTTTAAAATCTTTGTATGGGTTGAAACAAGCACCTAAACAATGGCAGGAAAAACTTGATAGTGTGTTGCTTTGTGATGGTTTTTCACCTAATGATGCTGATAAATGTGTGTACTCTAAATCTGAAAATGGTGATATTGTCATTATATGTTTGTATGTGGATGACATGTCAATCTTTGGTACATGCAATGAGATTGTCGCTAGAACTAAATTGTTTCTAGGATCAAAATTTGAAATGAAAGACATGGGTGAAGCCAATGTGATTTTAGGTATTAGAATCATAAGGAAGGGTGATAGTATTTTACTTTCTCAAGAACAATACATTGAGAAACTTCTTAAGAAGTTTGGGTTTTATGACTTAAAACTAGTGAGTACCCCTTATGATGCTAATTCTAATTTAATGAAAAATAGAGGAGAATCGTTATCTCAGCCTCAGTATGCCCAGATAATTGGGAGCTTACTGCACTTGATGAGCTTTTCTAGACCTGATATTGCTTATGCAGTAGGTAGACTGAGTAGGCTTATGAGATACTTAAGAGGTTCAATGGATTATGCCATTGAATATAGTGGATTTCCCGTTGTACTAGAAGGGTACAGTGATGCTAACTGGATTTCTGATTCAGATGAGACAAAATCCACTAGTGGTTATGTATTCACACTTGGGGGTGGTGCGATTACATGGAGATCATTCAGGCAAACTATTATTGCAAGATCAACAATGGAATCTGAGTTTGTTGTTCTTGAGATGGCTGGCAGTGAAGCTGAGTGGTTGAAAAACTTCTTAGCGAACATTCCACTAGGAATGAAACCAACCCCATCGGTATCAATACACTGTGATTGCCAATCGGCAATAGCTATAGCTAAAAATAAGAATTACAATGGAAAGAATAGACAATTGAGACACAGTTTGGTGAAGCAGCTGCTAAAGAGTGGAACTATTTCCATTGATTATGTGAAGTCAGAACGGAATCTAGCGGATCCTCTGACAAAACCCCTGGGAAGACAAATGATATTAGAAACATCGAGGGGAATGAGACTTAAGCCACTTGCAAACAAACAAGTGATGCATACACTTGATGAAATCACCTATATGAATCTTGGCATGATCTCTAGAGCACTCATGAATATTGGGCACGCGCATGGCCTACTTGCTATACCAACTACACTGTGCGTTAAGTTTCTTGATCTAAGACTGGTTCATATAGCTTGTTATACCAGCTCTGATGCATTACATCCTATGAAACCCAGAATAAAACGTTTTACAAAAAGACAATGGTGCATCAGTGACTTCGAAATCGGAAAGCCTCTTGGAAAAGGAAAATTCGGCAGAGTCTACGTCGCCAGAGAACGCAAGAGCAAATTTGTTGTTGCATTGAAGGTTATTTCTAAGGAGCAATTAGAGAAGTACAAAATCCATCATCAACTGAGGAGGGAGATGGAGATTCAGGTCAGTCTGAAGCATCCGAACGTACTTCGTCTGTATGGCTGGTTTCATGACTCCGAGAACGTTGACTTGAGTTTCCCCTCTACTCCTTATGTTTCTTCAGAAGCCAAACATCTTATTAGTCGGCTTCTGGTAAAAGACTCTTCACGAAGGCTCTCTCTTCAGAGGATAATCAAGAATGCAAATCCTATACGTCAGACAAGGATTGAACTGCACATGGCGAGCGCTGTAGATGCTTCGGGAAACCCTATCCCTTCGTCGTCGGTGTTGATGGCATCGTCGAAGCACATTGGGATTCGGTGTCATTCTGAGAACTTGGAGTTTCTGAAGTGCAAGAAGAAAGATCCCAACCCTGAAAAGTGTCTTCATAAGGGTCGAGAAGTTACTCGTTGTGTCCTTGGACTCCGTATTGCAACTGTCAAAAAGGTACTGCTCAAGCTGAAGGAAAGTTTTACCACTAGTATGAGATATGATGCAGTGTCACAATGGAGGGCTAACATAAGTGTTGGGAATAGGAATATTTTAGAGGATGAGAGCTTCGTTAAAGTTTATTTCCAATACACTGATACCTTCACCAGAGCTAGTGGGCCCTGGAAACAAATGGATGATGCATCAAATAAGATGCAATTAGGAGTGAAAGCATTTGAGAAAAAAGTAGCCATGGCTATGAATAAGCAAATAGAGGTCATCTATGCAACTAGAGAAAGGGTCACCATAGTCCAACCCAAAAATTTGTGTATAACCTTTGGTCATAAGGAAGATGAAATTCAACTGTCGAAGTTGGAGGGGATGGAGGAGTTGGTACAAGAGAGTCATCAGGAGAAGCCAAGTAAGATAGCATTGGGTCAGGGTTCAGTGCTTCTTGGCCCATGTCGAGTTAAGTTCGGTGGGGTCCAAGTCTTGCATGGCTTAGGTTGGGGCCATGCCAATGTCTACCTGAGTCTGGGCAAGCCCACTTTCAACCAAGTTGGGCTAGGTGCAGGGTCAAGTCAAGCAAAGTCAAGTTGGCTTGTGTGGGGTCGAGACATCGGCTTGGGCCTTGTCAAGATGAGTAAGGTCGACCCTATTTTAGATAAGGTTACGTCCAAATTGAGTCGTGTCCACGACGAGTTAGACTTAGGTCAGGGTTGTGACAAACTGGGCCAAGTCAAGTTAGGCTTGTGTTGGACTGATATATTGGGTCCATGTCAAATTGAGTTAGATCTGCATCAAAAGTGCACGAAGGAGATGGATGATTATGTTGGCTGCATGTACTACCATACAAATGAATTTGACTTGTGTCGCAAAGAGCAGCAAGCATTCGAGCAAAAATGCCTTAGGAAATCTAATCTCATCGTCTTCATGGCATCATCGAAGCACATTGGGATCCGGTGCCACTCTGAGAACTTGGATTTTCTGAAGTGCAACAAGAAGGATCCTAACCCTGAAAAGTGTCTTGAAAAGGGTCGCGATGTAACCCGCTGTGTCCTTGGACTAGCCATTTGTCGCAACCGAAAGTCGCGATGGGACGACGATCCAAAAAGAAACGAGTTTGAAAAAAGAGATTTTGGAGTCGCCACCATAGTTTATTCTGGAAAACTATGGAAAAACCATAAAAAGGATAAGACTGGGTCCATTGGAAAACCAGACTCGGGTTCGGGAGTCGGTTACGTGTAG 5322 0.394 MADVNNKPLESRTTVSGTQTVFAKSLPDVSQVEVFFGQNFWCWQERVSTFLDVYGFVAAPKRYAQKPDHKKKNNFLKSHPNESNPTWHRVRNDNHPRANIAEGDDIIVAVVSQANLMTNVSKWVVDSGATRHICANRSAFTSYTSVGDGEEHDHSCSGKGKVLLKLTSGKTLALSDVLHVPSIRVNLIFVALLGKVGVRVSFESDKIIMTKNNVFVGKGYCDQGLFILNISGNINESSSSAYIVDSYDIWHARLGHMNCSYVLKLQRLGFINMHDKQSSKCDICVESKLTKKSCFSVERQTELLGLIHTDLADMKQTMSRGGKNYFVTFVDDYSRYTKVYLIKHKDEAFDVFLTYKAEVENQLNKKIKRIKSDRGGEYVLFNDYCFKEGIIHEVTPPYSPESNGVAERKNRTLKEMMNAMLVSSSAPDNLWGEALLTACFLQNRIPHKKTGKTPYELWKGYQPNLKYLRVWGCLAKVMLPDPKKRKIGSKTADCMFLSYVEHSAAYRFLVVKSNILERNSIMETKNAEFFEHVFPLKVSEMSQPIDDNDDDDNNNNNNNNNNNNSDIMNEDLRRSKRQRKETSFGDDFYTYLVDSDPTNFVEATNAPDSKQWDKAIRIEIESIQKNNTWTLVDLPKGVKPIGCKWIFKKKYHPDGSIEKYKARLVAKGFTQKPNIDYFDTFAPVTRISSIRVLLALAAIHKLVIHQMNVKTAFLNGDLEEEIYMTQPEGCVVPGQENKVCKLLKSLYGLKQAPKQWQEKLDSVLLCDGFSPNDADKCVYSKSENGDIVIICLYVDDMSIFGTCNEIVARTKLFLGSKFEMKDMGEANVILGIRIIRKGDSILLSQEQYIEKLLKKFGFYDLKLVSTPYDANSNLMKNRGESLSQPQYAQIIGSLLHLMSFSRPDIAYAVGRLSRLMRYLRGSMDYAIEYSGFPVVLEGYSDANWISDSDETKSTSGYVFTLGGGAITWRSFRQTIIARSTMESEFVVLEMAGSEAEWLKNFLANIPLGMKPTPSVSIHCDCQSAIAIAKNKNYNGKNRQLRHSLVKQLLKSGTISIDYVKSERNLADPLTKPLGRQMILETSRGMRLKPLANKQVMHTLDEITYMNLGMISRALMNIGHAHGLLAIPTTLCVKFLDLRLVHIACYTSSDALHPMKPRIKRFTKRQWCISDFEIGKPLGKGKFGRVYVARERKSKFVVALKVISKEQLEKYKIHHQLRREMEIQVSLKHPNVLRLYGWFHDSENVDLSFPSTPYVSSEAKHLISRLLVKDSSRRLSLQRIIKNANPIRQTRIELHMASAVDASGNPIPSSSVLMASSKHIGIRCHSENLEFLKCKKKDPNPEKCLHKGREVTRCVLGLRIATVKKVLLKLKESFTTSMRYDAVSQWRANISVGNRNILEDESFVKVYFQYTDTFTRASGPWKQMDDASNKMQLGVKAFEKKVAMAMNKQIEVIYATRERVTIVQPKNLCITFGHKEDEIQLSKLEGMEELVQESHQEKPSKIALGQGSVLLGPCRVKFGGVQVLHGLGWGHANVYLSLGKPTFNQVGLGAGSSQAKSSWLVWGRDIGLGLVKMSKVDPILDKVTSKLSRVHDELDLGQGCDKLGQVKLGLCWTDILGPCQIELDLHQKCTKEMDDYVGCMYYHTNEFDLCRKEQQAFEQKCLRKSNLIVFMASSKHIGIRCHSENLDFLKCNKKDPNPEKCLEKGRDVTRCVLGLAICRNRKSRWDDDPKRNEFEKRDFGVATIVYSGKLWKNHKKDKTGSIGKPDSGSGVGYV 1773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02383 1773 SUPERFAMILY Protein kinase-like (PK-like) 1148 1244 IPR011009 -
Vimu11g02383 1773 ProSiteProfiles Protein kinase domain profile. 1171 1510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02383 1773 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 1625 1668 - -
Vimu11g02383 1773 FunFam Aurora kinase A 1163 1249 - -
Vimu11g02383 1773 Pfam Protein kinase domain 1171 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02383 1773 SUPERFAMILY Ribonuclease H-like 301 460 IPR012337 -
Vimu11g02383 1773 ProSitePatterns Protein kinases ATP-binding region signature. 1177 1200 IPR017441 GO:0005524
Vimu11g02383 1773 MobiDBLite consensus disorder prediction 542 576 - -
Vimu11g02383 1773 SMART serkin_6 1171 1351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02383 1773 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 1320 1361 - -
Vimu11g02383 1773 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 626 867 IPR013103 -
Vimu11g02383 1773 MobiDBLite consensus disorder prediction 1754 1773 - -
Vimu11g02383 1773 PANTHER GAG-POL-RELATED RETROTRANSPOSON 299 1077 - -
Vimu11g02383 1773 Pfam Integrase core domain 305 400 IPR001584 GO:0015074
Vimu11g02383 1773 Pfam GAG-pre-integrase domain 224 288 IPR025724 -
Vimu11g02383 1773 CDD RNase_HI_RT_Ty1 937 1076 - -
Vimu11g02383 1773 Gene3D Phosphorylase Kinase; domain 1 1159 1249 - -
Vimu11g02383 1773 MobiDBLite consensus disorder prediction 554 568 - -
Vimu11g02383 1773 SUPERFAMILY DNA/RNA polymerases 625 1037 IPR043502 -
Vimu11g02383 1773 Gene3D - 294 470 IPR036397 GO:0003676
Vimu11g02383 1773 MobiDBLite consensus disorder prediction 65 89 - -
Vimu11g02383 1773 ProSiteProfiles Integrase catalytic domain profile. 298 462 IPR001584 GO:0015074
Vimu11g02383 1773 Pfam CHCH domain 1628 1660 IPR010625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02383 Vimu-Chr11 41517194 41531118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02383 562 1058 Receptor kinase-like Gene Family AT4G23160 31.876 6.59e-81 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vimu11g02383 RVT_2 1.4e-78 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02383 - - zju:107433536 942.184