Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02377 ATGGCTAGTGTCTTTCCTGCATGTTCAGGTTCTGCTTCTCTTTTTCAAGGCAGAAATTTCTTCTCCTTTGCAACCAAAGGGTCTTCTCTGCACCTCAAAAGATCACTCTCTGCCAAATGTGTAGCTTCTCTGAGAACTGAAATATCAGTGCCTCCAGCAGTTGACACTTTCTGGCAGTGGCTCAAGGAAGAGGGTGTTGTCTCCAGCAAAACACCAGTGAAGCCTGGTGTGGTGCCAGAAGGCCTAGGACTGGTTGCACTCAAAGACATTTCTAGGAATGATGTTGTGTTACAGGTGCCCAAGAGGCTGTGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGGAAAGTGTGTAGTGGATTGAAGCCTTGGTTGGCTGTTGCGTTGTTTCTGGTAAGAGAGAGGTCAAGGGACGATTCTCTTTGGAAGCACTACTTCAGTATTCTTCCCAAGGAAACTGACTCTACAATTTACTGGTCAGAGGAGGAGCTCTCTGAACTAAAAGGGACTCAACTCCTGAACTCAACACTGAGTGTGAAGGAGTATGTGAAGAGCGAATTTAGGAGGCTGGAAGAAGAAATTATACTCCCTAATACGAAGCTTTTCCCTTCTCCTATTACAATTGATGACTTCTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATCAAAATCTAGTTGTGATTCCATTAGCTGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGTCTTTTCTCCTGGGATTACCTATTTTCCCTAAGGAGTCCTCTTTCTCTCAAGGCTGGTGACCAGGTGTATATCCAATATGATTTGAATAAAAGCAATGCTGAGCTGGCTCTGGACTACGGTTTCATTGAACCAAATGCAGACCGGAATGCATATACCTTGACACTGCAGATATCTGAGTCAGACCCCTTTTTTGGTGATAAATTAGACATTGCTGAGTCCAATGGTTTCGGTGAGACAGCATACTTTGACATCTTCTACAACCGCCCACTTCCACCGGGGCTGCTTCCATATCTGAGACTAGTAGCTCTAGGGGGCACTGATGCTTTCCTTTTAGAGTCAATATTTAGAAATTCCATTTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAGGAGCTAATATGCAGAGTGATTAGAGAGACCTGCAAAACTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATCAGAAGTTGAAAGAAGCTAAGCTAGATTCAAGGCTTGCTATAGCAGTGGGAATTAGAGAAGGGGAGAAGCAGCTCCTGCAGCAAATTGATGAGATCTTTAAGGAGAAAGAATTCGAATTGGCCCAGTTAGAATATTATCAGGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAGTGGCGATATCCTTGGGGACCTTGGAAAATTCTTTTAG 1470 0.4435 MASVFPACSGSASLFQGRNFFSFATKGSSLHLKRSLSAKCVASLRTEISVPPAVDTFWQWLKEEGVVSSKTPVKPGVVPEGLGLVALKDISRNDVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLAVALFLVRERSRDDSLWKHYFSILPKETDSTIYWSEEELSELKGTQLLNSTLSVKEYVKSEFRRLEEEIILPNTKLFPSPITIDDFFWAFGILRSRAFSRLRNQNLVVIPLADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFGDKLDIAESNGFGETAYFDIFYNRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVIRETCKTALAGYHTTIEEDQKLKEAKLDSRLAIAVGIREGEKQLLQQIDEIFKEKEFELAQLEYYQERRLKDLGLCGESGDILGDLGKFF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02377 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 482 IPR036464 -
Vimu11g02377 489 SUPERFAMILY SET domain 52 308 IPR046341 -
Vimu11g02377 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 53 431 - -
Vimu11g02377 489 CDD SET_RBCMT 65 303 IPR044431 GO:0016279|GO:0018022
Vimu11g02377 489 Gene3D set domain protein methyltransferase, domain 1 50 303 - -
Vimu11g02377 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 302 - -
Vimu11g02377 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 304 468 - -
Vimu11g02377 489 Pfam SET domain 81 287 IPR001214 GO:0005515
Vimu11g02377 489 Pfam Rubisco LSMT substrate-binding 320 444 IPR015353 -
Vimu11g02377 489 Gene3D - 304 468 IPR036464 -
Vimu11g02377 489 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
Vimu11g02377 489 ProSiteProfiles SET domain profile. 64 288 IPR001214 GO:0005515
Vimu11g02377 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 487 IPR011192 GO:0009507|GO:0030785
Vimu11g02377 489 SMART set_7 69 294 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02377 Vimu-Chr11 41420673 41423484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02377 57 243 NAC Transcription Factor Family AT3G56570 29.442 3.12e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu11g02377 SET 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02377 K00592 - gmx:100818113 893.264