Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02367 ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCTGAAGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCAAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCCGACATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACAAGAATGGGGATAGACCCCACGACCCACAAGCCCAAAACCGATGCGCTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCCAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTGGAAGCGGAAGCAAGACTGGTGAGAGAGTCAAGGTTGCAAGTCCAGAGCAACCTGGGACCCAGCTCCAACACACAACCCGCGAGGCTGGTCCTCAATAAAATTACTACGCAACAACCCTCTCTACCACCCTGCCTGGACATCCTTAAAGCGTGGCAAAGCTCATGGTCCAAGCCACAACCACCAACAAAAGAAAGTAACCACAAAATGATGCATAGCATGTACGCTATGATGCTATCCACCGAAGACACTCTAGAGTCACCAACATCCACGTTGTGCTTTCCAGGAACGACACCAACTATGCTTCCTGTATCAAACAATAACAACATTGGAGTACTGTTCAACGAAAACAACGACATGTTTCCTCTCCCAAGCACAAACATGGATGATGGTGGGTTGATGAAAGAGAACACAGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAATGTACGACAGCAACAATAATGTTGTTCCTCCTACACTCCCCAACGGTGTTGTCCTCGAAGGACTGAACAATGATGAAGGGTTGGTTTATGAGTCCAACGATAACTTGGGAGCGGAGGAAGAGAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTCAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGTCTGGTCCCTCTGTCTTCTGA 1197 0.482 MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESRLQVQSNLGPSSNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPPTKESNHKMMHSMYAMMLSTEDTLESPTSTLCFPGTTPTMLPVSNNNNIGVLFNENNDMFPLPSTNMDDGGLMKENTVLHLQDDDIMAAVEAFRATTTMYDSNNNVVPPTLPNGVVLEGLNNDEGLVYESNDNLGAEEENMAMMNGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGPSVF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02367 398 Gene3D - 13 66 - -
Vimu11g02367 398 CDD SANT 69 112 IPR001005 -
Vimu11g02367 398 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu11g02367 398 CDD SANT 16 61 IPR001005 -
Vimu11g02367 398 SMART sant 66 114 IPR001005 -
Vimu11g02367 398 SMART sant 13 63 IPR001005 -
Vimu11g02367 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu11g02367 398 Gene3D - 69 116 - -
Vimu11g02367 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Vimu11g02367 398 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu11g02367 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu11g02367 398 FunFam MYB transcription factor 68 129 - -
Vimu11g02367 398 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu11g02367 398 FunFam MYB-related transcription factor 13 66 - -
Vimu11g02367 398 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu11g02367 398 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02367 Vimu-Chr11 41308935 41310790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02367 1 251 MYB Transcription Factor Family AT3G01140 63.347 6.66e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g02367 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02367 K09422 - gmx:100809025 663.299