Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02363 ATGGCAGCAGAAGAAGATGAGGAGTTGCAACAACTCAGATCCAAAGCCACGGAGCTTTTCATCAGAGAAGAATGGAATGCCTCGATCGAAGCCTATTCCCATTTCATAACCCTCTGCACCCAAACGCTCTCCCATTCTCTCCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCTTTGTGCAATCGCGCAGAAGCGAGGTCCAAGTTGAAGGACTTCCACTGCGCCCTTCAGGACTGTGACCACGCTTTGGAACTCGATGCCACGCATTCGAAGACCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAACCGGTATGCTTCCGCTCTTGAGTGCTTCAGAACCGCCACGCTAGACGGGAACGCTGAAAGCGTAAGTGGGTACTTGGAGAGGTGCAAAAGTTTGGAGCTTTTGTCCAAAACCGGGTGTTTGGATCTTTCGGATTGGGTTTCAAATGGATTTCGAGGGAAGCTTCCAGAGCTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCTGAGATCAGTGGGAGAGGATTGTTTGCAACGAAGAATATTGATGCTGGGTCGTTGATCTTGGTCACTAAGGCAATTGCCATGGAAAGGAGTATCATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCCAGAACAAGGGGTTTGGTTAATAGGTTGTCAAGTGGGGAGAATGAGGAAGAACTTGAGGTGCCTGATGTGGGTCTCTTTAGACCTGAGAATGTAGAGAAGGATGGTGAAGTTGAGGTTGATGTTGATATGGTTAAGTTGGTTGGTATATTGGATGTGAATTCTCTGACTGAGGATGCTGTTTCGGCCAATGTGTTGAGGAGGGGCAATGATTGTTACGGTGTTGGCCTGTGGCTGCTCCCTTCCTTGATAAACCACTCTTGTTGTCCTAATGCAAGGAGGTTGCATGTTGGAGACTACTTGGTGGTTCATGCTTCTAAGGATTTGAAGGTTGGGGAGGAGGTGACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAATTGGTGTATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCTCAAAACAAGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAGGAGCAAATGAAGAGGTTGAAGGTTAGGGGAAAGGAAAAAGGGTATTTGAGGGCATCATTTTGGGAAGCTTATTCTCAGGTTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAAGATTCCTACTGCTGAGGCTGTGGTTGATAGCATCACTGATGTGGTTGGAGGAGATCACAGGCTGCTTAAGTTTCTGATGGAGGAGTTCAAGAAAAATAGTGGAGTTGTGGAGAGGGACAAAGTTTTCAAGATGGCAAAACAAGTTTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTGCAACTCTGCATTGCTGATTAA 1569 0.4665 MAAEEDEELQQLRSKATELFIREEWNASIEAYSHFITLCTQTLSHSLPNQKLRRSLCIALCNRAEARSKLKDFHCALQDCDHALELDATHSKTLLCKGKILLCLNRYASALECFRTATLDGNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKLPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLVNRLSSGENEEELEVPDVGLFRPENVEKDGEVEVDVDMVKLVGILDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSLINHSCCPNARRLHVGDYLVVHASKDLKVGEEVTFAYFDPLCGLSKRKEMSVNWCIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVFKLEEQMKRLKVRGKEKGYLRASFWEAYSQVYRTERAMKRWGRKIPTAEAVVDSITDVVGGDHRLLKFLMEEFKKNSGVVERDKVFKMAKQVFGKVVKKQAMKTLLQLCIAD 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02363 522 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 513 - -
Vimu11g02363 522 Pfam SET domain 178 355 IPR001214 GO:0005515
Vimu11g02363 522 CDD SET_SMYD 302 381 - -
Vimu11g02363 522 SUPERFAMILY SET domain 169 381 IPR046341 -
Vimu11g02363 522 SUPERFAMILY TPR-like 10 117 IPR011990 GO:0005515
Vimu11g02363 522 Gene3D SET domain 256 385 IPR046341 -
Vimu11g02363 522 SMART set_7 167 362 IPR001214 GO:0005515
Vimu11g02363 522 Coils Coil 2 22 - -
Vimu11g02363 522 ProSiteProfiles SET domain profile. 167 356 IPR001214 GO:0005515
Vimu11g02363 522 SMART tpr_5 91 123 IPR019734 GO:0005515
Vimu11g02363 522 SMART tpr_5 57 90 IPR019734 GO:0005515
Vimu11g02363 522 Gene3D Tetratricopeptide repeat domain 3 141 IPR011990 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu11g02363 SET 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02363 - - gmx:100812233 909.057