Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02361 ATGCATGCCTGTGACGCATTTCATTTCTCTGCAAACCCTTCACTTCATAACTCCCCTTTTCTTCTCCCTAACCAAGTTCATATTTTTCACTCCATGGATGCTACCACAACCTCTGAACTTCCCCCTGGCTTTAGGTTTCACCCAACTGACGAGGAACTAATCGTGTATTACCTCTGCAACCAAGCCACATCAAAGCCCTGCCCTGCTTCTATCATCCCAGAAGTCGATCTCTACAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAGTTTGGAGAAAATGAATGGTATTTCTTTAGTCCACGAGACAGAAAGTACCCAAACGGGGTGAGGCCGAACAGAGCAACAGTGTCTGGGTATTGGAAGGCCACTGGCACAGACAAGGCAATCTATAGTGGATCTAAGCTTGTGGGGGTGAAGAAATCCTTAGTATTTTACAAGGGTAGGCCACCAAAGGGTGACAAGACTGATTGGATTATGCATGAATACCGATTGGCGGAATCAAAACAATCGGCTAACAGGAAAATTGGGTCCATGAGGCTGGATGACTGGGTCCTGTGCAGGATTTATAAGAAGAAGAACATCGGAAAAGCAGAGCACAAGGAGGCACAGCCAAAAGTTCAAATGAGTGATCTTGTAGCTGAAAACAATGATGAGCAGAAAATGATGATGAACCTTCCCAGGACTTGGTCCCTCACTTACCTTTTGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCCCCTATTGCTCAAGCTTTGATTTTCAAACGAGCAATGCCAATATTGGAATTGACCCCTTAGTAAAATCTCAACCGGTTGAAATGGCCAACAATTATGTAGCAGGCTCAGGGAAGTACTGA 864 0.4433 MHACDAFHFSANPSLHNSPFLLPNQVHIFHSMDATTTSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRLAESKQSANRKIGSMRLDDWVLCRIYKKKNIGKAEHKEAQPKVQMSDLVAENNDEQKMMMNLPRTWSLTYLLDMNYLGPILSDGPYCSSFDFQTSNANIGIDPLVKSQPVEMANNYVAGSGKY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02361 287 ProSiteProfiles NAC domain profile. 40 192 IPR003441 GO:0003677|GO:0006355
Vimu11g02361 287 Gene3D NAC domain 49 196 IPR036093 GO:0003677|GO:0006355
Vimu11g02361 287 Pfam No apical meristem (NAM) protein 41 165 IPR003441 GO:0003677|GO:0006355
Vimu11g02361 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 210 - -
Vimu11g02361 287 SUPERFAMILY NAC domain 27 192 IPR036093 GO:0003677|GO:0006355
Vimu11g02361 287 FunFam NAC transcription factor 49 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02361 Vimu-Chr11 41182137 41183302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02361 32 244 NAC Transcription Factor Family AT1G69490 68.000 1.97e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g02361 NAM 8.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02361 - - gmx:100785110 457.603