Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02359 ATGGACGAATCAAACATACACCAGAATGAGAGAGATCTGGAGACTGTAGAGCCTGGAGTAATTCTGGGATGTGTGATGGCGGGGAGTGATCGCCGGTGCAAAAAGGCATGGAGCGGCTCCTGGCAGTGGAAGGGGCACATGGACGAATTGAACATACACTGGAATGAGAGAGATCTGGAGACTAGAAGTGAAGTGGAAAAGAAGAAAGGGTATTTGGGGGAAAGGGTTTATGCTTGCATTGCATTGCATCATCAAAGCCAAAACAGCTATGTCCCACAAGGATTCTGGAGATTTTCCCTCTCAGAACAACATGGTTTCAAGCCACAAAACACCCTTTGCAACATCAAAAGTGGACATCTGGTCGCACCCCACTCATTTTCTTCACAACACTCCTTCTCTCCAAACTACCTGCTGCTCCTTTCTCTGTCCCCTCACTATCCAAGTAATTGCCCTTTTTCGTTTGTACCTAAATTTGTTGTTCCATCTTTGGAGGCTGAAGAAGCACTTCTTCGGCTAGACAGGAAAATGGCTCTTGTTATCTTGACGGGTTTTCTCACAATGCTCTCCTCTGCTCATGCTTATGGTGGAGGGTGGACTAGTGCTCATGCCACTTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGTGGAGCATGTGGGTATGGAAACCTCTACAGCCAAGGCTATGGAACAAACACAGCTGCTTTGAGCACTGCACTGTTCAACAATGGGTTAAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCCAATGACCACAAGTGGTGCCTTCCTGGCTCGATTTTGGTCACTGCCACCAATTTCTGTCCACCGAACAATGCCTTACCAAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAGCCCGTCTTCCTACGCATTGCTCAATACCGCGCTGGAATTGTGCCTGTGTCCTACAGAAGGGTGCCCTGCAGGAGAAAGGGAGGGATCAGATTCACCATCAATGGACATTCTTACTTCAACCTAGTCCTAATCACAAACGTTGGCGGTGCTGGAGATGTGCATGGTGTGGCAGTCAAAGGTTCAAGAACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTGAATGGACAAAGCCTCTCCTTCAAGGTTACCACAAGCGATGGCCGAACTGTGGTGTCATACAACGTTGCACCAGCTGGTTGGTCCTTTGGACAAACCTACACCGGTGCTCAATTCCGCTAG 1266 0.4874 MDESNIHQNERDLETVEPGVILGCVMAGSDRRCKKAWSGSWQWKGHMDELNIHWNERDLETRSEVEKKKGYLGERVYACIALHHQSQNSYVPQGFWRFSLSEQHGFKPQNTLCNIKSGHLVAPHSFSSQHSFSPNYLLLLSLSPHYPSNCPFSFVPKFVVPSLEAEEALLRLDRKMALVILTGFLTMLSSAHAYGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02359 421 Gene3D - 328 420 IPR036749 -
Vimu11g02359 421 SUPERFAMILY PHL pollen allergen 325 417 IPR036749 -
Vimu11g02359 421 SUPERFAMILY Barwin-like endoglucanases 197 346 IPR036908 -
Vimu11g02359 421 CDD DPBB_EXPA_N 197 323 - -
Vimu11g02359 421 PANTHER EXPANSIN-A15 176 420 IPR002963 GO:0009664
Vimu11g02359 421 FunFam Expansin 187 324 - -
Vimu11g02359 421 FunFam Expansin 328 420 - -
Vimu11g02359 421 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 216 328 IPR007112 -
Vimu11g02359 421 Pfam Expansin C-terminal domain 329 406 IPR007117 -
Vimu11g02359 421 PRINTS Expansin signature 327 339 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 228 242 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 339 360 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 403 419 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 255 266 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 286 303 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 267 277 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 303 316 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin signature 374 395 IPR002963 GO:0009664
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 365 379 IPR007118 GO:0005576
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 403 417 IPR007118 GO:0005576
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 237 255 IPR007118 GO:0005576
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 215 233 IPR007118 GO:0005576
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 311 327 IPR007118 GO:0005576
Vimu11g02359 421 PRINTS Expansin/Lol pI family signature 197 212 IPR007118 GO:0005576
Vimu11g02359 421 Gene3D - 184 324 IPR036908 -
Vimu11g02359 421 Pfam Lytic transglycolase 233 318 IPR009009 -
Vimu11g02359 421 SMART dpbb_1 233 318 IPR007112 -
Vimu11g02359 421 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 338 417 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02359 Vimu-Chr11 41119320 41122279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02359 175 421 Expansin Gene Family AT2G03090 81.928 5.05e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02359 - - gmx:100527059 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02359 11 41119320 41122279 Vimu11g02359 11 41119320 41122279 ECH
Vimu11g02359 11 41119320 41122279 Vimu10g01059 10 9904015 9906676 ECH