Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02358 ATGTACATAATAATGTGCAGGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGACATAGATATCATACTTCTCATGTTTGCGCCAAATGGAAAGCCTTCGGTATGTAGGGGGAGACGCAGTAACTTAGAGGAAGTTATTGCGAAGTTTGCTCAACTAACACCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGCACAAGTAGTCAAACTATTGAGGTACCCACACAATTAAATTATTTGTTACTCTGTTCAATTTTGGTTTGTTGTTATAAATCACTGACTGACATTGGGCAGGATTTGAGTAATCAAGCCAGGTTATTGCAATCCCAAATTTCTGAGACTCACAAGAGATTAAGGGAGTCCCTCAATCAAATTAGAAACCGTAAGGAAAATATAAAAAAGCATCAACTTGTCTCGCTGCAATGCAACAATAATCAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTGCGAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAACCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCGTTTGGGAGTTATGCGAGTTATCTTGGTTCAAGTATGAAGAATGAGATGTCTAACTCGGTACAAGAAAATGGAGTTCTCAGTGAGCTGAGCAGCACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATACCTGCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAAATGCAGAGATGAATCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGTTTAGAAGCACCGAGATCTGGTTTTGATTCTAATCACCATGCTTGGGCTTCCACATCAGGTCCTTGTGGTGTTACAATGTTTGATGACCAGTTGTATGCCCAGGCAAGCTCCACTAAAATGCACTTTGGTTTCACATAG 1113 0.3872 MYIIMCRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEVPTQLNYLLLCSILVCCYKSLTDIGQDLSNQARLLQSQISETHKRLRESLNQIRNRKENIKKHQLVSLQCNNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSTMFLHKDVEGSASSSFGSYASYLGSSMKNEMSNSVQENGVLSELSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPNAEMNPHENPVDYHVNGSLEAPRSGFDSNHHAWASTSGPCGVTMFDDQLYAQASSTKMHFGFT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02358 370 FunFam Agamous-like MADS-box protein AGL30 21 103 - -
Vimu11g02358 370 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 234 - -
Vimu11g02358 370 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 ProSiteProfiles MADS-box domain profile. 8 60 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 Gene3D - 21 103 IPR036879 GO:0003677|GO:0046983
Vimu11g02358 370 SUPERFAMILY SRF-like 9 102 IPR036879 GO:0003677|GO:0046983
Vimu11g02358 370 Coils Coil 84 104 - -
Vimu11g02358 370 CDD MADS 9 63 - -
Vimu11g02358 370 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 61 IPR002100 GO:0003677|GO:0046983
Vimu11g02358 370 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02358 Vimu-Chr11 41104380 41107240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02358 8 359 Type I MADS-box Gene Family AT2G03060 42.222 1.98e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g02358 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02358 - - gmx:100811701 528.865