Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02354 ATGAAAGCCTGGCCTACTAGTGTTGTATACTCTTCACAAGAAAACCTCACTCGATACGCTTCTTCTTCTTCCTACTCTTCTTCCCCTCCTTCGATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCTAACTATGGTGTCGTTTCGTCTCATCAAGATTGTTATGTCTCCAACGGCGGCGGCTCAAACTGGGGTTTGCCCTTTATGAGGGAATTCCTTGGGAGGAACTTTGAGGAACATCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGACGATGGTGGTGGGGAAGACAGTGACAAAGTTAACAATAATGCTAATAACTTTAACGAAGAGAACCTTAATGAGAATTCTAATAGTGGTTCTGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCGGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTCTACGGCCCTCAGAACTGGAACCTTATAGCCGAAAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCAATGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCCTATTGTCTCAATCTCCCTAACGGAGGACTTGCTAACAACAACATGCCGAGTTTCCCATATGCAATTGCACCCTTCCATGGAGTAGCTGCTCCTCCTGTTGTTGGTGGTGGTGGGGTTGAGTTTGGCTTAAATGGCTCACCCCACATGGCTGCTTCCAAAGAAGTAATCTCAACCACCAAGCTGGCCCCTCCTCACATTGCCATGTATCCTCCACAAACACCCCTTGATTTCTTTTCAGGTGGTAGAAGCAATGACATGGTGGGAGAGTATTTTGGCCAGAACCATCACCAACCGTCTGGTTTTTACTCTCATTACCCCCAATATCTGATGCTAATGCAACAACACCAAAACAATCACAACTTTTACGGTTTCTCAAATTCCACAGCTCAGATACTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACACAGAGATCAAGCCATGAGCAGTGACCCCCCAGATGCAATTCCTCCTCCATTTATTGACTTCCTCGGAGTAGGAGCCACATGA 1356 0.4727 MKAWPTSVVYSSQENLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGGSNWGLPFMREFLGRNFEEHPNSDGAEEGKGSDSSDDGGGEDSDKVNNNANNFNEENLNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPPPYCLNLPNGGLANNNMPSFPYAIAPFHGVAAPPVVGGGGVEFGLNGSPHMAASKEVISTTKLAPPHIAMYPPQTPLDFFSGGRSNDMVGEYFGQNHHQPSGFYSHYPQYLMLMQQHQNNHNFYGFSNSTAQILGSEASLSSVAEHRDQAMSSDPPDAIPPPFIDFLGVGAT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02354 451 PANTHER MYB PROTEIN-RELATED 126 268 - -
Vimu11g02354 451 MobiDBLite consensus disorder prediction 256 281 - -
Vimu11g02354 451 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Vimu11g02354 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Vimu11g02354 451 MobiDBLite consensus disorder prediction 107 132 - -
Vimu11g02354 451 Gene3D - 190 263 - -
Vimu11g02354 451 Gene3D - 137 188 - -
Vimu11g02354 451 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Vimu11g02354 451 CDD SANT 140 181 IPR001005 -
Vimu11g02354 451 FunFam MYB transcription factor 137 188 - -
Vimu11g02354 451 SMART sant 188 236 IPR001005 -
Vimu11g02354 451 SMART sant 136 185 IPR001005 -
Vimu11g02354 451 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Vimu11g02354 451 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Vimu11g02354 451 CDD SANT 191 231 IPR001005 -
Vimu11g02354 451 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Vimu11g02354 451 MobiDBLite consensus disorder prediction 80 133 - -
Vimu11g02354 451 MobiDBLite consensus disorder prediction 80 106 - -
Vimu11g02354 451 FunFam MYB transcription factor 190 263 - -
Vimu11g02354 451 MobiDBLite consensus disorder prediction 256 273 - -
Vimu11g02354 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02354 Vimu-Chr11 40955432 40957753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02354 26 254 MYB Transcription Factor Family AT1G69560 53.782 5.44e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g02354 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02354 K09422 - gmx:100810632 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02354 11 40955432 40957753 Vimu11g02354 11 40955432 40957753 ECH