Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02348 ATGTCAGAGGTTAAAGGCTCTGCCATAAAGCTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACTTCCGACTCTCGCTTCTCCTTCATCTTCTTCTTCTCCCCCGGAACTTACCTCTGCAACACAACAACACCAAGAACACCAGGAACCACTAAGGAAAGAACTTACCTCACTTGAAGACGATGATGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGCTTCAGGCATACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGCGAGACAAGTGCTTCTGAAGAAAACACACCAAAGAAACCTGACAAGATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGTTGTATCACATTACCGACAGATAATGATGCCGGAGGCATTTCAGGGAGCTACACTTAATGCCTCAAATGGATTGCATAATGCCCTTTTGGGGAATGGAGCAGCTGTGTTGACTTTTGGTCCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAATATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAATGGTTCTGTTGATGGGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCAGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTCCTACATTTTGCCAACCTAGGTACCCTTTATCATTCTATACTACACCAGCATATTGGAGTTGTATGCCACCCTCTTGGAATATGTCATGTATGTCGTCCCAATCTTCTGTTAGCAACACTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAACAAACAGAAAGAAATACGTAACAGTTCAGAGCAAAATTTCTTGATTCCCAAGACTCTTAGAATCGACGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAATAATGACAGGGCCAGTTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCACAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACGGACCTGA 1371 0.4588 MSEVKGSAIKLFGRTISLPHNDSSALPTLASPSSSSSPPELTSATQQHQEHQEPLRKELTSLEDDDASSHETTEDLKSAASGILENPKTPSAETETSLQKSPENEEQSETSASEENTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAVVSHYRQIMMPEAFQGATLNASNGLHNALLGNGAAVLTFGPDTPLCDTMSSVLNIAERAQSCVSNGFHATEPNGSVDGGGHSTGVSVSTTSNSSHASSHESVDKRVEGFTPQLSYFPGAPWPYPMPPPTFCQPRYPLSFYTTPAYWSCMPPSWNMSCMSSQSSVSNTVSAPILGKHSRNGNIITPSNKQKEIRNSSEQNFLIPKTLRIDDPGEAAKSSMWSKLGTNNDRASSGGLFQAFPPKGNDMNHRVEASPQLQANPAALSRSLTFHERT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02348 456 PANTHER CYCLIC DOF FACTOR 2 1 456 IPR045174 GO:0003700|GO:0006355
Vimu11g02348 456 MobiDBLite consensus disorder prediction 50 73 - -
Vimu11g02348 456 MobiDBLite consensus disorder prediction 15 125 - -
Vimu11g02348 456 MobiDBLite consensus disorder prediction 433 449 - -
Vimu11g02348 456 MobiDBLite consensus disorder prediction 254 285 - -
Vimu11g02348 456 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Vimu11g02348 456 MobiDBLite consensus disorder prediction 254 280 - -
Vimu11g02348 456 MobiDBLite consensus disorder prediction 17 49 - -
Vimu11g02348 456 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Vimu11g02348 456 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Vimu11g02348 456 MobiDBLite consensus disorder prediction 84 106 - -
Vimu11g02348 456 MobiDBLite consensus disorder prediction 420 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02348 Vimu-Chr11 40843547 40846238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02348 8 454 C2C2-Dof Transcription Factor Family AT5G39660 39.796 1.04e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g02348 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02348 - - gmx:100813315 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02348 11 40843547 40846238 Vimu11g02348 11 40843547 40846238 ECH
Vimu11g02348 11 40843547 40846238 Vimu7g00803 7 7975990 7978720 ECH
Vimu11g02348 11 40843547 40846238 Vimu10g01055 10 9846925 9849436 ECH