Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02339 ATGTCGGTGACTCTGCACACAAACCTAGGTGACATAAAGTGCGAAATCTTCTGCGACGAGGTTCCCAAAACCTCCGAGGTTTATTTCTCCCCGAAAGTGCAGAGAAATGCAGCTGATGTGGCAATTGCAATCACATACCATTTTAAAAATCCTCGATTCATGCATGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCCACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAATGACGAGATACGAGAATCACTGAAGCATAATGCTAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAACGGAAGTCAGTTCTTCATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTCGAAGTTCTTGATCTCATGGAAAAGACTCAAACTGGAGCAGGAGATCGACCACTTGCCGAGATAAGGCTCAATCGTGTAACAATACACGCTAATCCTCTTGCTGGTTGA 546 0.4286 MSVTLHTNLGDIKCEIFCDEVPKTSEVYFSPKVQRNAADVAIAITYHFKNPRFMHGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02339 181 PIRSF Peptidylpro_ismrse 1 178 IPR024936 GO:0003755
Vimu11g02339 181 Gene3D - 1 181 IPR029000 -
Vimu11g02339 181 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 174 IPR044666 -
Vimu11g02339 181 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 173 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 SUPERFAMILY Cyclophilin-like 3 178 IPR029000 -
Vimu11g02339 181 CDD Cyclophilin_PPIL3_like 1 174 - -
Vimu11g02339 181 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 IPR020892 GO:0003755|GO:0006457
Vimu11g02339 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 IPR002130 GO:0000413|GO:0003755
Vimu11g02339 181 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 174 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02339 Vimu-Chr11 40579630 40582173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02339 3 178 U-box Gene Family AT5G67530 44.318 1.04e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02339 K12734 - gmx:100306466 296.975