Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02335 AGTATTATGGATGCAAAGTATGTTATGATGAATAAAGATATTACTGAGAAAACTTGTATTTACTGGCGAGCTGGGAGATGTAGCAGATATCCGTGCAAATTTAGACATGCAGAAACCCTTTCACCACATACTTCCTATCCTGGCATCAATGTCAAAAGCAAAATCTGTGGAAAAAAACGTCATTCATCTTATAAGATTATCTCCAAGGATAACCCTAACAAAACATTGGTTCAAAAGAATGGAAACAAAGAAGACCAAACAAATGTTGTAGAGGTGTCCAAGAAAATATCTCCAAATATATGCAAATATTGGACCAACAACATGTGTGTATATGGTGAAAAGTGCTTCAATTTGCATTCATGGTGTCATGGTGATGGATTTTCCACATTAACAGAACTTCACCAACACAAAAAGGTTATAACTGGAATTACACTTCTACCTGGAGCCAACAAACTCTATTCTGGAAGCACTGATGGGACCGTTCAAATATGGGATTGTAATAAAGGTCAATGCATCAAAGTTATACATTTTGGCACAGAGGTTAACTCTTTGATAAGTGAGGGGCTATGGATTTTTGTGGGTTTGAAAAATGTTGTCAAGGCTTTGAATACCAAGAACAATTTAGAGTTCACTCTTGATGGACCCAAAGGACGGATCTTTCACATGAATGTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCCTGGAGAGAAAACTCTGAAGCTAAGTCTCCTTTTGAATTGGTTGGCTCATTGATCGGCCATACTAAATCCGTGGTTTGCCTAACTGTTGGGCGTAATATGTTGTACTCAGGATCCATGGACCAAAGCATAACGGCTTGGGACATGGATACATTACAATGTACAATGACACTCAATGAGCATACTGGTGTAGTCACATCCCTTCTTTGTTGGGAGTATTATTTGTTCTCAAGTTCATCTGACGGCACAATTAAAATCTGGGAATGCAAGGAAGTGGGAACTAATTTGACCGTGGGTATAATATCACTATTTGGGATGCATGATGCAAATCGCAAGCCAATATTGTTTTCCTCTTGTACAGAGAATTTAGTTTGCATGTACGAATTGTCATCATTTTCAGAGAGGGGTTGTTTATTTGCTAAGAAAGATATTACATCATTTGAATTAGGCGCTGATGGAGGACTCTTCTTTACTGGAGATGGGACTGGTTTACTTAAGATATGGAAATGGAATGAGTTACCTAAGGGTAGTGGTTCCCATTGGTGGTGCGTGGTGCAGATCGGGACATTTGTCTACCAGCATATTGCTCCGGTTTTTCTAGTCACCCGAGGCATAAACGCTTACTACAACAATGTTTGGGCATCGGTTAGTGACTCCCTCGCCGCCCCTCCCCCTCCACAGTCGTCCCCTTTCTCGCCCTGCCTCCATTTCTTCTCCTTCTCCCTTGTCTGGGTGAAATGCTCCGCCTGCCATAACTACTCCACCAAGCGACCCGGATCCGCATTCATGCCCCGACATTCTAGAAGCTTTTTCTTTGTTTTGGTTTTTTGTTTGTTTTTAGCAAAGATGGGAACTTTATGGTTTAATTTTGCACATGGTGAAGCCCTTCAAGGTGCTGAACGGATGCGCGTCGACTTTGGTGGCAAAGGCTCTTGCGAGCATAGGCGCGTCGGAATATGTCGCAAGAATCATAAGAAGCCTGAAGAAGAAAACCCTGAAAAGTCAAATGAAATGAGGAAAAGAAGAAAAAGAGGCGTTTGGTTGTTCCATACGACGAAGGAAGAAGCACTCATAGAGAAGGTGAGAAGCATCGCGAGTAGAGGGAACCGCTGCTCTACCGACGGTACCAACCGCAGCAGCTCCCTCTCATCACCGCTGCAAGGAATGCATGCAGCCGAGGCGAAGATCTCTCAGAAACTCAGCGGTCCAGCTCAACGACGAGGCATCCGGTGGCGGAAGCAAAGGAGTGAAAAAAAATTGAACGATTGTGTTATGTGTGCGGTTGGATTGGTCCAACGTGTGAAAGTTATAACTGGAATTACACTTCTACCTGGAACCAACAAACTCTATTCTGGAAGCACTGATGGGACCGTTCAGATATGGGATTGTGATAAAAGTCAATGTATTAAAGTCATACATTTTGGCACAGAGGTTAACTCTTTGATAAGTGAGGGGCTATGGATTTTTGTGGGTTTGAAAAATGTTGTCAAGGGTATAATATCACTATTTGGGATGCATGATGCAAATCGCAAGCCAATATTGTTTTCCTCTTGTACAAACAATTTAGTTTGCATGTACGAATTGCCATCATTTTCAGAGAGGGATCGTTTATTTGCTAAGAAAGAGATTACATCATTTGAATTAGGCGTTGATGGAGGACTTTTCTTTACTGGAGATGGGACTGGTTTGCTTAAGATATGGAAATGGAATGAGTTACCTAAGGTGACATCGAATTAA 2454 0.4189 SIMDAKYVMMNKDITEKTCIYWRAGRCSRYPCKFRHAETLSPHTSYPGINVKSKICGKKRHSSYKIISKDNPNKTLVQKNGNKEDQTNVVEVSKKISPNICKYWTNNMCVYGEKCFNLHSWCHGDGFSTLTELHQHKKVITGITLLPGANKLYSGSTDGTVQIWDCNKGQCIKVIHFGTEVNSLISEGLWIFVGLKNVVKALNTKNNLEFTLDGPKGRIFHMNVGNNILFAGAEDGVITAWRENSEAKSPFELVGSLIGHTKSVVCLTVGRNMLYSGSMDQSITAWDMDTLQCTMTLNEHTGVVTSLLCWEYYLFSSSSDGTIKIWECKEVGTNLTVGIISLFGMHDANRKPILFSSCTENLVCMYELSSFSERGCLFAKKDITSFELGADGGLFFTGDGTGLLKIWKWNELPKGSGSHWWCVVQIGTFVYQHIAPVFLVTRGINAYYNNVWASVSDSLAAPPPPQSSPFSPCLHFFSFSLVWVKCSACHNYSTKRPGSAFMPRHSRSFFFVLVFCLFLAKMGTLWFNFAHGEALQGAERMRVDFGGKGSCEHRRVGICRKNHKKPEEENPEKSNEMRKRRKRGVWLFHTTKEEALIEKVRSIASRGNRCSTDGTNRSSSLSSPLQGMHAAEAKISQKLSGPAQRRGIRWRKQRSEKKLNDCVMCAVGLVQRVKVITGITLLPGTNKLYSGSTDGTVQIWDCDKSQCIKVIHFGTEVNSLISEGLWIFVGLKNVVKGIISLFGMHDANRKPILFSSCTNNLVCMYELPSFSERDRLFAKKEITSFELGVDGGLFFTGDGTGLLKIWKWNELPKVTSN 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02335 817 PANTHER - 672 736 IPR044715 -
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Vimu11g02335 817 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Vimu11g02335 817 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Vimu11g02335 817 Pfam WD domain, G-beta repeat 676 701 IPR001680 GO:0005515
Vimu11g02335 817 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 327 IPR001680 GO:0005515
Vimu11g02335 817 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Vimu11g02335 817 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Vimu11g02335 817 PRINTS G protein beta WD-40 repeat signature 688 702 IPR020472 -
Vimu11g02335 817 SUPERFAMILY WD40 repeat-like 104 409 IPR036322 GO:0005515
Vimu11g02335 817 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Vimu11g02335 817 SMART WD40_4 205 242 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 250 287 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 666 701 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 126 165 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 370 408 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 760 807 IPR001680 GO:0005515
Vimu11g02335 817 SMART WD40_4 290 327 IPR001680 GO:0005515
Vimu11g02335 817 SMART c3hfinal6 15 38 IPR000571 GO:0046872
Vimu11g02335 817 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 710 IPR001680 GO:0005515
Vimu11g02335 817 Gene3D - 25 186 IPR015943 GO:0005515
Vimu11g02335 817 MobiDBLite consensus disorder prediction 562 581 - -
Vimu11g02335 817 Gene3D - 660 816 IPR015943 GO:0005515
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Vimu11g02335 817 Gene3D - 188 424 IPR015943 GO:0005515
Vimu11g02335 817 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Vimu11g02335 817 SUPERFAMILY WD40 repeat-like 675 810 IPR036322 GO:0005515
Vimu11g02335 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02335 Vimu-Chr11 40541712 40554191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02335 149 296 Eukaryotic Initiation Factors Gene Family AT2G46290 22.941 9.88e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02335 - - vun:114180241 639.802