Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02329 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGCCTGGTGCGGCCCGTGCCAGTGGTTGAGCCGCTGGCCCAGCACCCGGTCCAGCCCGCTCCCGAGCCCTCAACCCCCGTGGATGAAGCTGCGGCGGGACCCTCCGGCTCCGCTTCGGCGGCCGAGGACGACAGCGTCGACGAGAACGCGTTGCTGCTGCCCTTGGTGGAGTGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAAACTCCTTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCATTGGTGTAATGAGAAAGGTGATATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCTCCGCCACCTCGTCTTCAACCTGAAGAAACTACCATTGACATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGACTCTTGGCAATTGCCGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCAAACGCCAATGGAGCTGCATTTTGTCGTTCAGTTGCTCTAATTGTAAGATACAGAAATCTTGAAATCCTTTTTACCGAATTATTTGTGAAGTCATATGTATGTCCACCCGAAATGCATCTCCTGGAGGCCCCTGTTGTTTGGCACTTGACATTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACCTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCAGGCGACAAAGACAAGAGGCTGCAGCATTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACCCGCACCAACAATTAACACACACCATGCGAAAGCAGAAGGCACAACAATGTCGATGGGTCATTCATGTTCATCTTCCACTTACAATGAGTATCGAAGAAAGCAATTCCAGTCTATGAGCTCTCGTGGAGATGGAGGGTGGAACAGGAATGACGCTTCACTGATTTGCCATTGTGGAGAGAAGTTTGTGTTGAAGACTGTTGGAAGTGAAAATGATGGATGCAACTACTTCAAATGGTGCATTGATTGGGGAATTGACGAAAGTGTTAGCTGTGAGGTGTTGGAAGCAAATGATGAGAGGTTGTTGAAGAGTTTTGAAAATGAAAGTGATAAGAAGATAATTGGTGTGCATAAAGCTGTGATAGGTCTTCACAGGTGGATGAAATTTTTGGTTGGGGTTGTTAGTGTTCTATGTGCAATGAACATCATTATATTTGCAATGTTGATGGGAAGAGCTTGA 1389 0.4716 MSDHLVLFVDRLVRPVPVVEPLAQHPVQPAPEPSTPVDEAAAGPSGSASAAEDDSVDENALLLPLVECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRLQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNANGAAFCRSVALIVRYRNLEILFTELFVKSYVCPPEMHLLEAPVVWHLTLMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAPAPTINTHHAKAEGTTMSMGHSCSSSTYNEYRRKQFQSMSSRGDGGWNRNDASLICHCGEKFVLKTVGSENDGCNYFKWCIDWGIDESVSCEVLEANDERLLKSFENESDKKIIGVHKAVIGLHRWMKFLVGVVSVLCAMNIIIFAMLMGRA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02329 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 122 IPR013083 -
Vimu11g02329 462 Pfam Protein of unknown function (DUF3675) 119 190 IPR022143 -
Vimu11g02329 462 Pfam Protein of unknown function (DUF3675) 225 273 IPR022143 -
Vimu11g02329 462 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Vimu11g02329 462 CDD RING_CH-C4HC3_MARCH 68 114 - -
Vimu11g02329 462 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Vimu11g02329 462 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 283 IPR033275 -
Vimu11g02329 462 SMART ringv_2 67 114 IPR011016 GO:0008270
Vimu11g02329 462 Coils Coil 156 176 - -
Vimu11g02329 462 SUPERFAMILY RING/U-box 67 118 - -
Vimu11g02329 462 MobiDBLite consensus disorder prediction 24 54 - -
Vimu11g02329 462 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02329 Vimu-Chr11 40356251 40361156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02329 57 143 C3H Transcription Factor Family AT2G37950 35.354 1.82e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02329 - - ahf:112734090 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02329 11 40356251 40361156 Vimu11g02329 11 40356251 40361156 ECH