Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02321 ATGGAAGAGAGAAATGATAATAGTGAGAAACTGGATGAGGTTATGCTACCAGGTTTCAGGTTCCATCCAACAGACGAGGAGCTTGTTGGATTTTATCTAAAGAGAAAGGTTCAGCAGAGGCCACTTTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCGACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTAGAGCTGGGTTCTGGAAGGCTACAGGGACGGATCGCCCTATATATTCCTCGGAGGCTTCCAAGTGTATTGGTCTGAAGAAATCCCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATTAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTAACCCATCCTCATCCCCTAAGAACTTCATGGACAAGACCATTCCTGCTAATGAATCCTGGGCAATCTGCAGAATCTTCAAGAAAACCAATGCTACAGCACAAAGAGCTCTCTCTCACTCTTGGGTCTCACCCTTACCTGAAACCACCACATCAGATCATATGTTAGCCACTGATAGATATGGCAACCAATTTTCTACAGAAAACATGCAAGTGCCAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTTAATAACAATGACTCACAACACTCAACCACTACTAGTAGCACCAGCCCTTGTCCTATAGATATTCTAGCTTCTTATAACAAACCAATTATTAATCCATTAATGCTTTACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCACTGGCTTAATATTCTCATCTCCTATTGAAACTTCAACAATCTGTGCTAAATCTTCGATGGATGTTTCTTCATTGCTAATGAGTACCTCAACTTCTGTGCTTGGAGAATTTAATAGTAAGACCTCTGAGGGAATGTGCACAAACTTTGGTGGGTTACAGGAGCATAGTAACGGCTACCAAATACCACTACTACGTGAGATGCAAGGAAGCTTTGGCAACCACGACGACAATGTGTTGGTAAAGATTCCTAACGTGAATGTGCCTCGTGTTGGTGACCAACAATCGGAGACAGTGCGATCCATTGGGTTTCCATTCAGTATTGGCGATGCATGGAAGTCAAATGTGCTTTGGGATACTTCATCTTTGTCCTTGTGA 1215 0.4263 MEERNDNSEKLDEVMLPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEASKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNPSSSPKNFMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTSDHMLATDRYGNQFSTENMQVPKKTSLASQFCTFNNNDSQHSTTTSSTSPCPIDILASYNKPIINPLMLYKPLDLLPISNGDLSTGLIFSSPIETSTICAKSSMDVSSLLMSTSTSVLGEFNSKTSEGMCTNFGGLQEHSNGYQIPLLREMQGSFGNHDDNVLVKIPNVNVPRVGDQQSETVRSIGFPFSIGDAWKSNVLWDTSSLSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02321 404 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Vimu11g02321 404 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Vimu11g02321 404 FunFam NAC domain-containing protein 35 24 177 - -
Vimu11g02321 404 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vimu11g02321 404 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Vimu11g02321 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02321 Vimu-Chr11 40153728 40155336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02321 2 319 NAC Transcription Factor Family AT1G26870 57.927 1.21e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g02321 NAM 4.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02321 - - vra:106768003 787.334