Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02319 ATGGAAAACAAGAGAAAAAGATGGGAATGTGAAGGAGGGGAAAACAAGAGTGAAGAATGGGAAAAACTGAGGGAAGAAGCAGCTTCAATGGCTGCTGCTATTCTTGGTGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCAGGGCGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTTTGGTTAGGCACTTACGACAATGCTGAAGATGCTGCAAAAGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTCTTTCCTTCCCAATCTTCTCCTTATGTTTCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGACTCAAAGCTAGAAGCTTTGAATCATGTAGGGTTACCACTCGTTTTCCGAGTAACCACTATGATCAAGAAACCAAAGTAGAACCTCAACCTCAATCTAAGCCTGAACCAGAACCAGAAACAGAAGAACCCCATTACGAGAATTTTGTAGACATGGAAGTAAATGGGATTGTTGAAGAAAGTTATCATGGTGCTAGTGCCATAACTACATGTGACTATAGCTGTGGAACTAATGAAGAGGATTCTAACGAGAAGGGTAGCGGGGAAGATTTCAGCTTGGGTTATAATTTTGCTGAGAATGATTATGATGAAGAGAAGAAGATTGTAAGTGGTAAAGGTTGTGATTTTGAGTTTTTGGAGTGTGGTGGATCAGTGAGTTACTCTTTTTCTCCGTTTGAGATAGCAGAAGAGATGGTGGGAGCGATAGAGGAAAACAAATATTACGATGTTGATGATTCAGCTTTAGGCAGAGAAACTTTGATGATGAAGTATGAACGTAAATTCTCTGCTTGTTTTTACACCTTAACAGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACAACAAAATGGAAAGGACTTGGAAAATATTTTAGGATGGTAA 966 0.411 MENKRKRWECEGGENKSEEWEKLREEAASMAAAILGARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDNAEDAAKAYDEAARLLRGANTRTNFFPSQSSPYVSALPPKIAKLLLLRLKARSFESCRVTTRFPSNHYDQETKVEPQPQSKPEPEPETEEPHYENFVDMEVNGIVEESYHGASAITTCDYSCGTNEEDSNEKGSGEDFSLGYNFAENDYDEEKKIVSGKGCDFEFLECGGSVSYSFSPFEIAEEMVGAIEENKYYDVDDSALGRETLMMKYERKFSACFYTLTGVSECLRLQVGQQNGKDLENILGW 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02319 321 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Vimu11g02319 321 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vimu11g02319 321 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Vimu11g02319 321 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Vimu11g02319 321 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Vimu11g02319 321 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Vimu11g02319 321 FunFam ethylene-responsive transcription factor RAP2-11 42 101 - -
Vimu11g02319 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 262 - -
Vimu11g02319 321 MobiDBLite consensus disorder prediction 148 165 - -
Vimu11g02319 321 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Vimu11g02319 321 MobiDBLite consensus disorder prediction 139 165 - -
Vimu11g02319 321 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02319 Vimu-Chr11 40107246 40108211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02319 39 119 AP2-EREBP Transcription Factor Family AT5G19790 63.415 3.41e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g02319 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02319 K09286 - gmx:100793940 361.303