Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02312 TCCAATCACCCTTTTTCTTCCTCTTCTCCTTCTTCTTCTTCTGTTCCGTTGCCCAATGGCTCTTCACCCGTTTCAGAAGTGGAGCAGGAGCAAGAAGAGGTTGCTAAGTGCTTGATGCTGCTGTCTAGAGATTCTACCTTCAAGGGTCGTTTTGCTTCTGTCACCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCATCCTCTCCTGATACTCGGATTGGTGTCACCAATGGTAACTATAACTTTGTCTCTAATAATGCTTATGATCTTGCTGACAACAAGTTGCTTAGGCTTAATGATATCAAGTTAAAGTCTGTTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAATGGTTGACTCAGATGTCTCCAATGATGAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTGGTAAAGAAATTAGTGAAGGAGGAGTTGGATTATGATGGCACAGATGGAACTGCAAGGAAGTTTGATTCCAGAAAGAGAAGCAACTATGATTCTCTTGATAACAATCCACTTGGCGGTTCTATCAAGAAGATAACAAATGGTTTTGGTAATGAAGTATATGGGAATAACACAAAAGGCTGGAAGTACGAGTCTTTGGAGGAGGGTGAAAGGGACTATGATTCTTATGATTATTCCATTGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCCAGGTCTCATAACAGTAAGGCCCTCAATGGGAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAATCTAAGAAAAGCAAGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGACACAAAAGATCCCATTTCATTGGTGGTTCTGAAGAAAACACTCTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCCTGATTGATCTAAATCTACCTGCTCCTGTTGACGAATAA 1008 0.4147 SNHPFSSSSPSSSSVPLPNGSSPVSEVEQEQEEVAKCLMLLSRDSTFKGRFASVTECSDNNSVVLEAKSSSPDTRIGVTNGNYNFVSNNAYDLADNKLLRLNDIKLKSVEFGASDNSGSRYFKHGPKTKMVDSDVSNDEFKWPKVGDKSSKYTATLVKKLVKEELDYDGTDGTARKFDSRKRSNYDSLDNNPLGGSIKKITNGFGNEVYGNNTKGWKYESLEEGERDYDSYDYSIEESHENSSETESYPAPRSHNSKALNGKKSTSKAKKKLKSKKSKDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02312 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 302 IPR013087 -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 244 262 - -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 1 29 - -
Vimu11g02312 335 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 1 28 - -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 171 185 - -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 171 192 - -
Vimu11g02312 335 SUPERFAMILY beta-beta-alpha zinc fingers 277 303 IPR036236 -
Vimu11g02312 335 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 335 - -
Vimu11g02312 335 Pfam C2H2-type zinc finger 280 302 - -
Vimu11g02312 335 MobiDBLite consensus disorder prediction 235 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02312 Vimu-Chr11 40031822 40033176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02312 20 335 C2H2 Transcription Factor Family AT1G26610 39.009 2.56e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02312 - - vun:114177115 488.804