Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02294 ATGACACAGGTTCCTACAACTATTTCCACCACTGCACAGCACCTGATACCACAACCCGCATCAGTGTCAGCTTCTGGGGTGACAGAATCCTTTGGTTTTTCTCACTCTGATAAAAAATTGCACTCTTCTGCTGTCATTGTTGACAAGCCCAATGATGATGGCTTCAACTGGAGGAAGTATGGGCAGAAACATGTAAAGGGAAGTGACTTCTCTCGAAGTTATTACAAATGCACGCATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAAAGTACGCTTCCGCTACTATTTGGGAACTGA 354 0.435 MTQVPTTISTTAQHLIPQPASVSASGVTESFGFSHSDKKLHSSAVIVDKPNDDGFNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQSTLPLLFGN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02294 117 ProSiteProfiles WRKY domain profile. 51 110 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02294 117 SUPERFAMILY WRKY DNA-binding domain 49 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02294 117 Pfam WRKY DNA -binding domain 52 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02294 117 Gene3D WRKY domain 38 110 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02294 117 SMART WRKY_cls 51 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02294 117 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 110 IPR044810 GO:0003700
Vimu11g02294 117 FunFam WRKY transcription factor 38 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02294 Vimu-Chr11 39831768 39832686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02294 47 117 WRKY Transcription Factor Family AT2G03340 76.056 1.43e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g02294 WRKY 9.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02294 - - vun:114179749 194.897