Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02260 ATGGAAGAAGTTTGTCTGAATAGTGAGCCATTTTTTGATGAAAGCGATGATGTTGATGTTGAAGGCTCTTCTATAATAGAACACGGGCTTGAATCTTTAAATTCAAAACTGAAAAACCCTCCAGTTCCAACAGTGGGCCTGGAGTTTGATTCCTTTGAGGAAGTTTACAACTTCTACAATATCCATGCAAAGGAACAAGGTTTTGGAATCAGAGTTAGCAATTCATGGTTTAGATCAAAGAAAAAAGAGCGCTATAGGGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAATCCAAGGCCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTGATTAGAATGGTTGAGTCCAGGAGATGGAGAATAGTGGAAGTTGAGCTTCAACACAACCATAGTCCACAGAGCAAACAATTTTACAAGTCACACAAGAAAATGATCCTTGAAGCCAGCAAATCACAACCACCTCCAGAGCCAGTAACAGAAGTACACACCATCAAGTTGTATCGAACAACTGTCATGGATGTTGATTACAATGGTTACTCAAATTCTGAAGAAATCCATGACACCAATTTTGATAAATTTAAATATTTGGAACTTAGAGAAGGGGATGCCAGTGCTATATATAATTATTTTTGTCGAATGAAGTTGACTGATCCAAATTTCTTTTACTTGTTTGATATTGATAATGATGGGCACCTAAAAAATGTTTTCTGGGCTGATTCCAGGTCAAGGATTGCTTATAATTACTTTAATGACACAGTTACAATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTGATATCATTTGTTGGTGTAAACCATCATGGACATTCTGTATTATTGGGCTGTGGCTTCCTTGGACATGAATCAGTGGATTATTTCGGATGGATATTCAAGGCATGGCTTGAGTGTATGCTTGGTCGTCCTCCACATGTTGTTATTACTGACCAGTGCAAGCCATTGCAAATCGCAGTTGCTCAGGTTTTCCCTCATGCTCGTCATTGTTATTCTTTGCAGTATATCTTAGAAAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGATACGAAGCAATCAGAAGACAGATGTATAATGCTATATACGAGTCATTAAAGATAGTTGAGTTCGAATCTTCTTGGGCTGATATGATTAAATGTCATGGACTGGGAGATAACAAGTGGCTTCTGACATTGTATAAGGATCGGCATCTATGGGTCCCTGTTTACCTAAAAGATGTTTCTTTGATAGGACTGATCTCAACTAAAGAAAATGAGGGTCTGACTGCATTTTTTGATCGTTATGTGCATAAACACACATCCTTTAAGGAATTCCTTGACAAGTATGACTTAGCTCTGCACAGGAAGCACATGAAAGAAGCCATGGCAGATTTGGAGAATAGAAAAGCAAGCTTTGAATTCAAAACGAGATGTAATTATGAGGCCCAACTCTCAAAGGTGTACACAGAAGAAATCTTTAGAAAGTTTCAAGTAGAGGTTGAGGGCATGTATTCTTGCTTCAACACAAGACAGGTTAATGTCAACGGATCTATAATAACATACATTGTGAAAGAAAGAGTTGAAGTTGAGGGGAGTGAGAAGGGAGTTAAAAGTTTTGAAGTTTTATATGAGACTACAAAATTGGATATTCGATGCATTTGCAGTTTGCTCAATTACAAAGGATATCTGTGCAGGCATGCATTGAATGTTCTCAATTATAATGGCGTTGAGGAAATCCCATCTCGGTACATCCTACGCCGTTGGACGAGGGATTTCAAGCATTCGTGTAATCAATTCCATGCTCCTAGTAATAATGATACCTACAACCCTGTGCACTTATATACCCATCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACGGGAGCATTATATGGTTGCTCTAAAGGAATTGGAGGAGTTGCTAGATAAGTTTGATATAGAGGATAGTGACTCAATGTAA 1998 0.3844 MEEVCLNSEPFFDESDDVDVEGSSIIEHGLESLNSKLKNPPVPTVGLEFDSFEEVYNFYNIHAKEQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESRRWRIVEVELQHNHSPQSKQFYKSHKKMILEASKSQPPPEPVTEVHTIKLYRTTVMDVDYNGYSNSEEIHDTNFDKFKYLELREGDASAIYNYFCRMKLTDPNFFYLFDIDNDGHLKNVFWADSRSRIAYNYFNDTVTIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFGWIFKAWLECMLGRPPHVVITDQCKPLQIAVAQVFPHARHCYSLQYILERVPEKLGGLQGYEAIRRQMYNAIYESLKIVEFESSWADMIKCHGLGDNKWLLTLYKDRHLWVPVYLKDVSLIGLISTKENEGLTAFFDRYVHKHTSFKEFLDKYDLALHRKHMKEAMADLENRKASFEFKTRCNYEAQLSKVYTEEIFRKFQVEVEGMYSCFNTRQVNVNGSIITYIVKERVEVEGSEKGVKSFEVLYETTKLDIRCICSLLNYKGYLCRHALNVLNYNGVEEIPSRYILRRWTRDFKHSCNQFHAPSNNDTYNPVHLYTHLFNSALPVLEVGAQSREHYMVALKELEELLDKFDIEDSDSM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02260 665 Coils Coil 463 483 - -
Vimu11g02260 665 Pfam MULE transposase domain 261 348 IPR018289 -
Vimu11g02260 665 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 656 IPR031052 GO:0006355
Vimu11g02260 665 ProSiteProfiles Zinc finger SWIM-type profile. 547 583 IPR007527 GO:0008270
Vimu11g02260 665 Pfam FAR1 DNA-binding domain 57 139 IPR004330 -
Vimu11g02260 665 SMART 26again6 558 585 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02260 Vimu-Chr11 39291704 39297944 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu11g02260 MULE 8.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02260 K17604 - gmx:100811666 1196.03