Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02251 ATGTTGGGTGGATTATATGGAGACCTTCCTCCACCTTCGTCGGCGGAGGAAGACAACAAACCCACTCCCAATGTGTGGTCTTCCAGCACCAAGATGGCCCCTGCCACGCTCCGCAAGCCCGCCTCGCTCTTCGCGCCTCCCCAAACCCTCCTCCGAACCCAGCCCAAGCCCAAGCCCGTTGTCGCCAACACTAAGGCCCTTCTCTCCCCCACGCCCGCCCCGCCTCCTGACGACTCCCTGCAGCCTGCTCTTGTCGGCGTCCAGTCCACCGTTCTCGAGGAGTACGACCCGGCCCGCCCCAATGACTACGAGGAGTACCGCCGCGACCGCAAGCGCAAGGCTCGTGAGGCCGAGATGCTGCGGGAACTCGAGCGCCGCCGCCAGGAGGAGGAAGACGAAGAGAGGGAGCGCGAGAAGGAACGAGAGCGAGAAAGGGATTACAGTGAATCGAGGTTGAATGTTTCCGGTGAAGAGGCTTGGAGGAGGCGCGCGGCGATGAGTGGGGCCGTGCCGAGATCACCGTCGCCTCCTCCGACGGGGAATTCGGACGGGTTTAGCATTGGGAAGTCTGAGACAGGAGGGTTGGGAGTGGGGGCGGGTGGACAGATGACGGCGGCGCAGAGGATGATGGCAAAGATGGGATGGAAGGAGGGGCAGGGACTTGGGAAGCAGGAGCAGGGGATTACCACTCCTTTGATGGCAAAGAAAACGGATAGAAGAGCTGGGGTTATTGTGAATGCTAGTGATAACAGCAAGAAAGTGAAGAGTGTTAACTTCAATGGAGTGCCTACCAAGGTCCTGCTGCTTAGGAATATGTGCTTTTGGATATTGATCTTTAGTGATGTTGAAAGTTTATCAGTCAGGTTTGTGTTTTATGAGATTTTGGTCTGCCTGATGAGCCCTTGTAAAGTTTTGGCTTGGTCAGTGATGGATGTGGTTTTAATAATCGTGACGAGTGATGAATTTGATGCTATGAGCTATGGTTTACAACTAGAGAAGGGGTACGCTCTAAATTTGAGTGGTGGAGTAAAGCCTAGCAATGTAGAGTGTAGGATTTTAGTTAAGTACATAAAAGAAAATGTGCATGGAACAGAAGTTCGTGAAGCTGCAGGGTCAGAACTGTTTTATGGTGGTGCATGTCAAGAAGTGTCAACAGAAGTGGGTCCTGGCGAGGTAGACGACGAGCTGGAAGATGAAGTGGGATCAGAATGTGCCAAGTATGGAACTGTAACCCGAGTTCTGATATTCGAGATAACAGAACCAAATTTCCCCACTGATGAAGCTGTAAGAATATTTGTGCAATTTGAGAGATCCGAAGAAACAACTAAAGCGCTTATTGACCTCGATGGTCGATATTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGATGAGGAGAAGTTTGGCAAGAATGAGTTAGCTCCAATGCCTGGAGAAATTCCTGGCTTCACCTGA 1455 0.521 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRTQPKPKPVVANTKALLSPTPAPPPDDSLQPALVGVQSTVLEEYDPARPNDYEEYRRDRKRKAREAEMLRELERRRQEEEDEEREREKERERERDYSESRLNVSGEEAWRRRAAMSGAVPRSPSPPPTGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFNGVPTKVLLLRNMCFWILIFSDVESLSVRFVFYEILVCLMSPCKVLAWSVMDVVLIIVTSDEFDAMSYGLQLEKGYALNLSGGVKPSNVECRILVKYIKENVHGTEVREAAGSELFYGGACQEVSTEVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFGKNELAPMPGEIPGFT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02251 484 PANTHER SPLICING FACTOR 45 SPF45 1 272 IPR040052 GO:0045292
Vimu11g02251 484 MobiDBLite consensus disorder prediction 18 35 - -
Vimu11g02251 484 Gene3D - 383 464 IPR012677 -
Vimu11g02251 484 PIRSF SPF45 3 274 IPR040052 GO:0045292
Vimu11g02251 484 PIRSF SPF45 383 480 IPR040052 GO:0045292
Vimu11g02251 484 CDD RRM_UHM_SPF45 387 473 IPR034653 -
Vimu11g02251 484 Coils Coil 103 145 - -
Vimu11g02251 484 MobiDBLite consensus disorder prediction 1 196 - -
Vimu11g02251 484 FunFam G-patch domain-containing protein 383 464 - -
Vimu11g02251 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 465 IPR000504 GO:0003723
Vimu11g02251 484 MobiDBLite consensus disorder prediction 97 158 - -
Vimu11g02251 484 SMART rrm2_1 383 461 IPR003954 GO:0003676
Vimu11g02251 484 ProSiteProfiles G-patch domain profile. 202 248 IPR000467 GO:0003676
Vimu11g02251 484 Pfam G-patch domain 205 244 IPR000467 GO:0003676
Vimu11g02251 484 SMART G-patch_5 200 246 IPR000467 GO:0003676
Vimu11g02251 484 SUPERFAMILY RNA-binding domain, RBD 390 467 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02251 208 250 C2H2 Transcription Factor Family AT5G26610 53.488 1.15e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02251 K12840 - gmx:100800998 377.867