Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02250 ATGTCTTCTCGCAGATCAAACGGAAGAGTAGCTAGTGGTAGAGATGCATTAGAAAATGAAGTCCCCTTGCCGCCGCTGCCTGATCGTACAACAAATTTGCAATGGGGTGAGGTTAAGCCACTTTCAGGAAAACCATACTGTCATAGTATTCTTGCAAGTTCAAATCTCTATCCCCGTTATTATATGTGGCCTGCGACCAGCGTACGGTTAGAACTTCCTTTTTGTGAGGTCCCCACTATTCTCACGTATATGGGCAAGAGCTGGGACATGGTGTATTGTGGACAAAACAAACTGCAAGTTTTTAGACCCGCAGGATGGAAAAAGTTTGCTGTTGAGAATTGTTTGAGGGTTGGAGATGCATGCATTTTTGAGCTGATGGAAAGCAGTGACAAGAAAGTCATCTTTGAAGTTCAAATTCTTAGAGGCGACATCCCATCTGAAATTCTTAAAAATGAAATGATCATGGGTCAGAATCGGGAAATGCCAATTGTCCTTAACTAG 501 0.4271 MSSRRSNGRVASGRDALENEVPLPPLPDRTTNLQWGEVKPLSGKPYCHSILASSNLYPRYYMWPATSVRLELPFCEVPTILTYMGKSWDMVYCGQNKLQVFRPAGWKKFAVENCLRVGDACIFELMESSDKKVIFEVQILRGDIPSEILKNEMIMGQNREMPIVLN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02250 166 ProSiteProfiles B3 DNA-binding domain profile. 85 143 IPR003340 GO:0003677
Vimu11g02250 166 Gene3D - 36 143 IPR015300 -
Vimu11g02250 166 Pfam B3 DNA binding domain 80 135 IPR003340 GO:0003677
Vimu11g02250 166 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 145 IPR044837 -
Vimu11g02250 166 SMART B3_2 46 143 IPR003340 GO:0003677
Vimu11g02250 166 CDD B3_DNA 69 141 IPR003340 GO:0003677
Vimu11g02250 166 SUPERFAMILY DNA-binding pseudobarrel domain 43 141 IPR015300 -
Vimu11g02250 166 MobiDBLite consensus disorder prediction 1 24 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu11g02250 B3 4.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02250 - - gmx:100804948 233.417