Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02244 AACTTTGAGAAGAAGGGAAAGATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCAAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGTTACCAGAGCATCAAAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGGTGTGTAGGGGCAATTTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCTCAAGCCGAAGCAGTGCATCTCAGAGTACGTCAGAATGCATCTCTCTACAGTCCCACTAGCCCTACCAACAGTGCTTCTCAATCTTCAAAGATCATTCACTCACAAGCCAAACCTATTTTTGACATCGACATGGACATGGTGGTGGACCACACCACCTACACTGATTCAATGTGGGTTCTAGAAATAGTGGTGATTGCGGCGGTGGCGGTGGCTGTGAGAGCTGTGGCGGACACTGTTCGCCCGCTTAATTACTTTGAAACAGAGGAAGAAGAGAGAGCTTGGTTGCAGCGGCACCGTTGCATCCCTCTCTCGCGTGAAGAGAAGAAGGAGAAGATAAAGCTTCTCACAGCGACTATCCTGGCAGCGGCGCGACTTCGATGGAGGCAGTGGCGGCCACGACGCGAAGAGGATCCCTGGCGGTGA 771 0.5058 NFEKKGKMKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQNASLYSPTSPTNSASQSSKIIHSQAKPIFDIDMDMVVDHTTYTDSMWVLEIVVIAAVAVAVRAVADTVRPLNYFETEEEERAWLQRHRCIPLSREEKKEKIKLLTATILAAARLRWRQWRPRREEDPWR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02244 256 Coils Coil 99 119 - -
Vimu11g02244 256 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 144 - -
Vimu11g02244 256 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Vimu11g02244 256 Pfam Lateral organ boundaries (LOB) domain 20 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02244 Vimu-Chr11 39120953 39126555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02244 8 174 AS2 family AT1G31320 70.349 2.85e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu11g02244 LOB 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02244 - - vum:124847068 315.849