Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02242 ATGGCAAACCCGACACCAAAACCTAGTCTCACTCTCGTCCTTCATGTCATCGTATGTTGCTGGTTGTGTTCGTCCATTGTTATGGGAGCCACTTACAATGTGGTAAACTTTGGAGCCAAATCAGACGGTAAAACGGACTCAACCAAGGCGTTCCTCAATGCATGGGCCAAGGCTTGTGCTTCCACCAGCTCTGCCTCGATTTATGTTCCACGAGGGAGGTTCTTGCTCAGAAGTGCTACCTTCGGTGGCCAATGTCACAATCAAGCTATCACCTTTACCATTGATGGCACTCTGGTGGCTCCTTCTGATTACAGGGTCATCGGAAATTCTGGTAAGTGGTTGCAGTTTGAGGGTGTGAACGGGGTTTCCATCCGCGGTGGGGTGTTGGATGGCCAAGGCACAGCCCTGTGGAATTGCAAGAACTCCGGCAAAGGAAACTGCCCCACCGGTGCCACGACGTTGGGTTTCACCAACTCGAATAACGTCGCTATTAGTGGGTTGACCTCGTTGAACAGTCAAATGTTCCACATAGTGTTCAATGGATGCCAAAATGTGAAGTTGCAAGGAGTGAAGGTGATGGCGGACGGAAACAGCCCTAACACCGACGGCATCCACGTACAAATGTCCTCTCACGTCACCATCCTCAACTCTAACATTCGAACAGGAGATGATTGCATCTCCATAGGCCCAGGAACCACAAACTTGTGGATTGAAAACATTGCATGTGGACCAGGACATGGAATAAGCATTGGGAGCTTGGGGAAAGATTTCAAAGAAGCTGGTGTACAAAATGTGACGGTTAAAACAGTTACCTTCACCGGGACTCAAAATGGCGTCAGAATCAAGACCTGGGGGAGACCCAGCAATGGCTTTGTGAGGAATGTTCTTTTCCAAGACGCTATCATGGTCAATGTCGAAAACCCCGTTATAATTGACCAAAATTACTGCCCAGGAAACAAGGGCTGCCCCGGTCAGGCATCTGGAGTGAAAGTTAGTGATGTGACATACAGAGACATTCATGGAACATCTGCTACACAGGTTGCTGTGAAATTTGATTGCAGTTCCAAGTATCCATGCAGCGGGATCAAGTTGGAGGATGTGAAGCTCACATACAAGAACCAGCGTGCTGTATCTTCCTGCAACCATGCAGATGGAGCCTCGTTGGGTTCAGTTCAACCCCAGAGTTGCTTTTAG 1194 0.4874 MANPTPKPSLTLVLHVIVCCWLCSSIVMGATYNVVNFGAKSDGKTDSTKAFLNAWAKACASTSSASIYVPRGRFLLRSATFGGQCHNQAITFTIDGTLVAPSDYRVIGNSGKWLQFEGVNGVSIRGGVLDGQGTALWNCKNSGKGNCPTGATTLGFTNSNNVAISGLTSLNSQMFHIVFNGCQNVKLQGVKVMADGNSPNTDGIHVQMSSHVTILNSNIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGKDFKEAGVQNVTVKTVTFTGTQNGVRIKTWGRPSNGFVRNVLFQDAIMVNVENPVIIDQNYCPGNKGCPGQASGVKVSDVTYRDIHGTSATQVAVKFDCSSKYPCSGIKLEDVKLTYKNQRAVSSCNHADGASLGSVQPQSCF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02242 397 PANTHER - 30 384 - -
Vimu11g02242 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Vimu11g02242 397 Gene3D - 25 395 IPR012334 -
Vimu11g02242 397 Pfam Glycosyl hydrolases family 28 59 382 IPR000743 GO:0004650|GO:0005975
Vimu11g02242 397 SMART pbh1 209 230 IPR006626 -
Vimu11g02242 397 SMART pbh1 232 252 IPR006626 -
Vimu11g02242 397 SMART pbh1 262 283 IPR006626 -
Vimu11g02242 397 SMART pbh1 182 208 IPR006626 -
Vimu11g02242 397 SMART pbh1 326 366 IPR006626 -
Vimu11g02242 397 SUPERFAMILY Pectin lyase-like 16 397 IPR011050 -
Vimu11g02242 397 FunFam Polygalacturonase 7 22 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02242 Vimu-Chr11 39068516 39070954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02242 31 397 Glycoside Hydrolase AT3G59850 67.120 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02242 K01184 - gmx:100806846 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02242 11 39068516 39070954 Vimu11g02242 11 39068516 39070954 ECH