Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02239 ATGGAAAGAGGCAGAGGCAGTTACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAATTACCACGGTCGTGACAGTGGCACTTACCAAGGCCGTGACAGTGGCAGTTATGGTATCGGTGAGGGCAATGCTGGCCACTACACTTCTGATGGTCGATACGGCAATACTGGTCGTAGCAGTTACGGTGGCCGTAGAGGAAGGTTCTACCAACATCCCCAGTTAAGTGGTGGCAATGAACACAGGTCTCCTTCTCAACCACAGCCACAAGAACGGTGGCAACGGAAGTTAAATCCTTCTTCCCCTGGTGAATCTTCAGAACCGCATGCTTCTCAACCTCGACCTGAAACTGAAACTGAAACTGGAATTGAAACTGAAAAACGGAAAATTCAAAATCCAGACGTCGGATCTTTGAGGATATCAGAGGAAAAAGCAGAGAGCATCAGACCAATGCGTAGGCCTGACAAAGGAGGAAAAATAGCAGCTAAGAGAAACACCCTTGAGGTGAACCATTTCCTTGTTGAGTTTGATGAAAAGAGAGTAATATTCCACTATGACGTGGATGTGAAGGCCAAGGCTCCGTCCATGAACAACCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTTTCCGATCACGCGTTGCCGACTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGCTTGAAGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGAAGCAAGAACGCTTTGCTATTCGGTCAGTCTTAAACTTGTGAAGGACCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCCTGGAACTCCTGCAGATGTTTTACAGGGCTTGAATTTGGTGGGGAAGGAGAATCCCAGTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAGAATCATCCCATAAGTCCGGAAGACTCTAAAGGGATAATTGCAACTGGAGGATTTCAGCAGAGTCTTAAGACCACTTCTCAGGGCTTGTCCTTGTGCGTCGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAATTTCGATTTGAGGAAGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAAGGTAACCCACCGGACGACGATGCAGAAATACACTATTACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACACTGAGGGACGGAATCCAGCAGGGGAATGTAGTCTAATTGATTACTTTTGCAGGAAGCATAACGTGGAGATTCAACACACGGAAATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCCATGGAGTTGTGCATCTTGATCAAGGATCAAAGATGCCCCAAAGAGAATTTACTGAATACAGATGCTGGCAATGTGTTGAGAAGAATGTCACTGGCCACTGCAGGAGAAAGGAGAAGTAAAATATGCACTATAGTGAAATCAGAGGAAGGACCGTGTGGGCCTCACAGAATCTGTTTTGACAGAGGTGGTGTTATGGATAGTTTTGGCATGCGTGTGGACACTTCCATGACAAAAGTGACAGGACGCGTAATTCAGCCCCCAGAATTGAAGATAGCTAATCCAAAGGGTGGGATTATTAGTATGACACTGGAAGTGGGGAAACCACAGTGGAATCTGAAGGGAGGATCAATGGTGGAAGGCAAGCCGCTTAAGTGTTGGGGCTTTCTTTATTTTGCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCATTAAAAATCTTCGTAAGAAGTGCGGATTACTCGGCATTAGAATGGAGAAACCAGCTTGTTCTCAAGAATTTCCTATGTCGACTCTTCGCAAATACGATTCGCTGTGTGAGTTACTTCAAAACATTGATTATCAGGTTCAAAAGGAATGTGAACAAAGGCTGCAGATTCTTCTTTGTGTGATGGCCGACAAAGATTCAGGCTACAAGAGCCTAAAATTGATCGCTGAGACCAAGGTTGGGGTGGTGACACAATGCTGCTTACGTTGTCATGCTAATGATGCAAAGGATCACTTCCTTACAAATCTTGCCTTCAAGATGAATGCCAAAATTGGAGGAAGTAATGTAGAACTAATGAACAGGCTCCCAAACTTTGAAGGCGAAAGTCATGTTATGTTCATAGGGGCTGATGTTAACCATCCACCTTCCAGGGACACCAGCAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGGTCACCGGGTTGAAAAAATTTTGAATTTTGGAAGAATTTGCCTCGAACTGGTTTCTTATTACAATAAGCTGAACAAAGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTAACATGGTTCTCACGGAAGAGCTGCAAGATTTGAAATCAGTGTTTGGTGACTCAAATCACTCACCAACCATCACTCTTATTGTTGCACAAAAGCGACATCAAACTCGATTTTTTGTGAAGGGTAAAAGTTTCAATGTGCTACCCGGAACAGTTGTAGACACAGAGGTGGTACATCCTTATGAATTTGACTTCTACCTTTTTAGTCACAAAGGGATATCGGGTACAAGCAAGCCCACTCATTATCATGTGTTATGGGATGAACACAAATTTACATCTGATGATTTGCAGAAACTTATATACGAAATGTGTTTTACCTTTGCAAAGTGCACTGGACCAGTATCTTTAGTTCCTCCAGTGTACTATGCTGATCTAGCTGCATACAGAGGCCGAGTATACTATGAAGCAATGAATGAAGCCAAATCTGATCGCTCTGCCACTACTGTATCTTCTTCCTCATTTTCTGCTTTAAATGATGAAGGCTGTTACAAGTTGCACCCTGACGTGGAAAACCTTATGTTCTTCATTTGA 2997 0.4458 MERGRGSYGGRSSYRGRGNYHGRDSGTYQGRDSGSYGIGEGNAGHYTSDGRYGNTGRSSYGGRRGRFYQHPQLSGGNEHRSPSQPQPQERWQRKLNPSSPGESSEPHASQPRPETETETGIETEKRKIQNPDVGSLRISEEKAESIRPMRRPDKGGKIAAKRNTLEVNHFLVEFDEKRVIFHYDVDVKAKAPSMNNRPQKISKFLLSSIRDKLFSDHALPTSAYDGDKSIFSSERLKEGTFDVEVVKGGEARTLCYSVSLKLVKDLELRKLRDYLSGKVPGTPADVLQGLNLVGKENPSKQCDTVGCCFFPKNHPISPEDSKGIIATGGFQQSLKTTSQGLSLCVDFSVLSYFGEEKPVLKFLHEQIENFDLRKFPKFKKKVEDLLVGLKVKVTHRTTMQKYTITKLTPMVTSKIRFPVLDTEGRNPAGECSLIDYFCRKHNVEIQHTEIPALDFGGNKMNYVPMELCILIKDQRCPKENLLNTDAGNVLRRMSLATAGERRSKICTIVKSEEGPCGPHRICFDRGGVMDSFGMRVDTSMTKVTGRVIQPPELKIANPKGGIISMTLEVGKPQWNLKGGSMVEGKPLKCWGFLYFADSKCQFKSEQFIKNLRKKCGLLGIRMEKPACSQEFPMSTLRKYDSLCELLQNIDYQVQKECEQRLQILLCVMADKDSGYKSLKLIAETKVGVVTQCCLRCHANDAKDHFLTNLAFKMNAKIGGSNVELMNRLPNFEGESHVMFIGADVNHPPSRDTSSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICLELVSYYNKLNKVWPEKIVIFRDGVSESQFNMVLTEELQDLKSVFGDSNHSPTITLIVAQKRHQTRFFVKGKSFNVLPGTVVDTEVVHPYEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRVYYEAMNEAKSDRSATTVSSSSFSALNDEGCYKLHPDVENLMFFI 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02239 998 SUPERFAMILY Ribonuclease H-like 649 958 IPR012337 -
Vimu11g02239 998 MobiDBLite consensus disorder prediction 74 108 - -
Vimu11g02239 998 ProSiteProfiles Piwi domain profile. 663 957 IPR003165 GO:0003676
Vimu11g02239 998 SMART Piwi_a_2 663 957 IPR003165 GO:0003676
Vimu11g02239 998 Pfam N-terminal domain of argonaute 164 293 IPR032474 -
Vimu11g02239 998 Gene3D - 733 998 IPR036397 GO:0003676
Vimu11g02239 998 Gene3D - 547 725 - -
Vimu11g02239 998 Pfam PAZ domain 365 481 IPR003100 GO:0005515
Vimu11g02239 998 CDD PAZ_argonaute_like 358 471 - -
Vimu11g02239 998 Pfam Argonaute linker 1 domain 305 348 IPR014811 -
Vimu11g02239 998 MobiDBLite consensus disorder prediction 109 156 - -
Vimu11g02239 998 Gene3D paz domain 351 477 - -
Vimu11g02239 998 ProSiteProfiles PAZ domain profile. 388 472 IPR003100 GO:0005515
Vimu11g02239 998 SUPERFAMILY PAZ domain 352 510 IPR036085 GO:0005515
Vimu11g02239 998 MobiDBLite consensus disorder prediction 1 156 - -
Vimu11g02239 998 Pfam Piwi domain 664 956 IPR003165 GO:0003676
Vimu11g02239 998 CDD Piwi_ago-like 528 956 IPR045246 -
Vimu11g02239 998 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 161 961 - -
Vimu11g02239 998 SMART PAZ_2_a_3 357 489 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02239 Vimu-Chr11 38994601 38997857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02239 148 957 Eukaryotic Initiation Factors Gene Family AT1G48410 34.611 2.47e-139 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02239 K11593 - gmx:100805250 1133.63