Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02238 ATGGGTTCAGGGAACTCGGAAGTTAGGGTATTGGGGAAGTGGGCGAGCCCATTTAACAACAGGGTTGAGCTTGCTCTCAAGCTGAAGGGAGTAACCTACGAATACTCCGAGGAAGATCTCGCCAACAAGAGCGATGACCTACTCAGGTACAACCCTGTTCACAAGAAGGTTCCTGTTCTTCTCCACAATGGAAACCCTTTAGCTGAGTCTCTTATTATTGTTGAATACATCGATGAAACTTGGAATAATAACCCCCTTTTGCCTCAACACCCTTATGAGAGAGCCTTGGCACGTTTCTGGGCTAAGACATTAGACGACAAGATTTTGCCTGCATTATGGAATGCGTGCTGGAGTGATGAGAAAGGGCGAGAGAAGGCAACGGAGGAAGCCATTGAAGCTTTGGAGATCCTGCAGGAAGCACTGAAGGAGAAGAGGTTCTTTGGAGGAGAGAGCATAGGATTGGTAGATATTGCTGCTAATTTCATTGGTTATTGGGTTGAAATATTGCAAGAAATTGCAGGGTTGAAATTGCTTACCCTTGAGAAATTTCCAAAGTTATATAAATGGAGCCAAGAGTTTGTGAATCACCCTGTCATCAAAGAGGGTCTGCCTCCCAGAGATCAATTGTTTGCTTTCTTCAAAGCTTCTGCAAAGAAATAG 660 0.4455 MGSGNSEVRVLGKWASPFNNRVELALKLKGVTYEYSEEDLANKSDDLLRYNPVHKKVPVLLHNGNPLAESLIIVEYIDETWNNNPLLPQHPYERALARFWAKTLDDKILPALWNACWSDEKGREKATEEAIEALEILQEALKEKRFFGGESIGLVDIAANFIGYWVEILQEIAGLKLLTLEKFPKLYKWSQEFVNHPVIKEGLPPRDQLFAFFKASAKK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02238 219 Coils Coil 123 144 - -
Vimu11g02238 219 FunFam Glutathione S-transferase U10 2 86 - -
Vimu11g02238 219 CDD GST_N_Tau 8 81 - -
Vimu11g02238 219 Gene3D - 87 219 - -
Vimu11g02238 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 213 IPR010987 -
Vimu11g02238 219 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Vimu11g02238 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Vimu11g02238 219 SFLD Glutathione Transferase (cytosolic) 5 218 IPR040079 -
Vimu11g02238 219 Gene3D Glutaredoxin 1 86 - -
Vimu11g02238 219 SFLD Main.3: Omega- and Tau-like 5 218 IPR045073 -
Vimu11g02238 219 Pfam Glutathione S-transferase, C-terminal domain 107 197 IPR004046 -
Vimu11g02238 219 CDD GST_C_Tau 91 215 IPR045074 GO:0004364|GO:0006749
Vimu11g02238 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 209 IPR045073 -
Vimu11g02238 219 FunFam Tau class glutathione S-transferase 87 219 - -
Vimu11g02238 219 Pfam Glutathione S-transferase, N-terminal domain 8 79 IPR004045 -
Vimu11g02238 219 SUPERFAMILY GST C-terminal domain-like 79 217 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02238 Vimu-Chr11 38989577 38990310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02238 8 215 Glutathione S-transferase Gene Family AT3G09270 57.619 2.01e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02238 K00799 - gmx:100527381 380.178