Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02221 ATGGAAGGGAATGTGAAAAGCGAGCAAATCGTGGATGTAGGATCGGTTGTGGAAGCCGTTTCAGCTGATGACGGTGACGCTCCTCTCTACAGCCTCGAAAGTCTTTGCATGCGATGTGGTGAAAACGGGATTACAAGATTTTTATTGACTTTAATTCCTCACTTCAGAAAGGTATGTCTTGTCTATTGCTCTATTTACTCTTGTGATTGGCAAGTGGTTACTGTTTTTGATCCTTCATTGATAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTCGTTACACTTTGGCAATCCCATCAGGCGAACAGAAGGTACTCCAATACTCTTTATCATCTATCTTCTTCCCATTCAGTTAATGTCCATGCTGAGATGCTAAATCGTCAAGTGGTTAAATCAGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAACGTGGTAGTCTGTCAACGGTCGAAGGGATACTTATGAGAGCAGGTGATGAACTTCAGGCCCTTCAAGAGGAACGCAAAAAAGTGACTCCAGAGACAGCTGATGCAATTGATCAATTCTTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCATCACCTTTATTCTTGATGATCCTGCTGGAAATAGCTTCATCGAAAACCCGTTTGCACCATCGTCTGATCCATCATTGACGATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACACAGATTGAAGGAACTCGTGTTGATGCCCTGGAAGGGGAAGAAGCTGTGCCTACTGATCAGGTAAGGACAGAACCGCATGGATCAATAGGGGCTACAGCTGGGCATCGAGCCATTGCTCAGAGTAACAGTGCAGAAATGGCTGAAGCCTTGTTTCGATATACGGCACCAGAAGAGGTGATGACTTTCCCATCTACTTGTGGTGCCTGCGCTGCCAAGTGTGAGACTCGAATGTTTGTCACCAGTATCCTCTTAGAAGCATTTTCAATACTTTCCTTGGGATATTGTTTGATTATGTTACATATTCCTTACTTTCAAGAAGTAATTGTTATGGCATCCACATGTGATGTCTGTGGCTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAGGGGAAAAAAATTACTCTTTCGGTGAAGAATGTCAATGACCTTAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCGGAAATTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATAGTTACAACTGTTGAAGGTTTAATCACAAGAATTGGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAAAATAGTAGAAGCAAGTGGATAGACTTTAAAACAAGACTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTTGATGACGCATTAGCCAATTCTTTTATAGCACCTGCAACTGATGATCTGAAAGAGGACAAACAATTAGCATTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATGGACACCTCTTCTGCCGAAGTTGGTTCTGCACCAACCAATACTTCTAAAATTGAGTGA 1647 0.4274 MEGNVKSEQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGITRFLLTLIPHFRKVCLVYCSIYSCDWQVVTVFDPSLIGTMKYSLLVKFNHVVVVTLWQSHQANRRYSNTLYHLSSSHSVNVHAEMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAGDELQALQEERKKVTPETADAIDQFLVKLRACATGESAITFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTRVDALEGEEAVPTDQVRTEPHGSIGATAGHRAIAQSNSAEMAEALFRYTAPEEVMTFPSTCGACAAKCETRMFVTSILLEAFSILSLGYCLIMLHIPYFQEVIVMASTCDVCGYRNSELKPGGRIPEKGKKITLSVKNVNDLSRDVIKSDTASVKVPEIDLELASGTLGGIVTTVEGLITRIGESLERVHGFTFGDSLDENSRSKWIDFKTRLNKLLSLEEAWTLILDDALANSFIAPATDDLKEDKQLAFEEYERSWEQNEELGLNDMDTSSAEVGSAPTNTSKIE 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02221 548 MobiDBLite consensus disorder prediction 521 548 - -
Vimu11g02221 548 NCBIfam ZPR1 zinc finger domain 356 531 IPR004457 GO:0008270
Vimu11g02221 548 Gene3D ZPR1, zinc finger domain 314 383 IPR042452 -
Vimu11g02221 548 Pfam ZPR1 zinc-finger domain 352 497 IPR004457 GO:0008270
Vimu11g02221 548 Pfam ZPR1 zinc-finger domain 34 77 IPR004457 GO:0008270
Vimu11g02221 548 Pfam ZPR1 zinc-finger domain 126 223 IPR004457 GO:0008270
Vimu11g02221 548 PANTHER ZINC FINGER PROTEIN ZPR1 123 537 IPR040141 -
Vimu11g02221 548 FunFam zinc finger protein ZPR1 116 251 - -
Vimu11g02221 548 Gene3D ZPR1, A/B domain 120 251 IPR042451 -
Vimu11g02221 548 Gene3D ZPR1, A/B domain 385 527 IPR042451 -
Vimu11g02221 548 Gene3D ZPR1, zinc finger domain 26 75 IPR042452 -
Vimu11g02221 548 Coils Coil 160 180 - -
Vimu11g02221 548 MobiDBLite consensus disorder prediction 525 548 - -
Vimu11g02221 548 FunFam Zinc finger protein ZPR1 385 527 - -
Vimu11g02221 548 FunFam Zinc finger protein ZPR1 311 384 - -
Vimu11g02221 548 SMART zpr1 320 499 IPR004457 GO:0008270
Vimu11g02221 548 SMART zpr1 34 224 IPR004457 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02221 6 547 C2H2 Transcription Factor Family AT5G22480 63.004 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02221 K06874 - gmx:100798741 762.296