Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02204 ATGTTGAGTGTTCGGCCTGTGCTAACGCTCGGTCTTTTGAAGAGAACCTCATCCTTCGATAAAGTGTTCGGTTATTATAGGAAGAAAGGTGTTTTATCATTCGGTCGGGTCCTTAGTATGAATATGGATAGTGAAATTCACGGCGTTCATCCTGAAATTCTAATGATTACCAGTTCTCAAGTAGAGATGGGTAAGTCATGTGCTGATGGGTTTCCAGTTACTACATCACCCGGGTGCACGAACGGCCATAAGCTAAATATTCATGCAGTCCGGACAATGTCAAAGTGGTCGGTTCAACCTTACCTTGTTGAAACAAAGGTCAAAGTTAGTAGCAGTATGCTAGCTGGGGATAGCAAAAGCAGCAGCAGACTTAGACAATCATCATGCTCATGTCCACCCAGAATGGTTAAAATTTCAGCTCAGCCTTCTTCTTCTTCCTCTTTCTCTTCTACAGCACGGCTTAAAAGACACGATGTTTTCATCAGTTTTAGAGGTGAGGACACGCGCAACAGCTTTACAAGCCATCTCTATGCAGCCTTTCAGCACAAGAATATTCAAGCCTTCATAGATAACAGGCTTCAGAAAGGGGATGTGATCTCTCCCTCTATTTTTGAAGCCATCAAACACTCCAATGTTTCTCTTGTTGTTCTCTCCAAGCACTATGCTTCATCCACCTGGTGCTTGCGTGAACTTGCCAAAATACTTCAACTCAGGAAACGTGGAGGACACATTGTGATACCTGTTTTCTATAAGATTGACCCTTCCTATGTAAGGAAGCAGACAGGAACTTACGGAATGGCGTTTCAAAAATATAAAGAAGATGTCAAACAAAACATGGCCATGTTGCAGAAATGGAAAGCTGCTCTCACTGAAGTGGCTGATATAGTTGGGTGGGAATCAAAGAATTTTAGGTATAACAGATACACAGAAATTGTCAAAGACGTTATGCAAAAACTCAACCATATGTATCCCACTGAAGTAAAAACACTTGTCGGAATTGATCAAAATCTTGCTCCTATTGAATCATTATTAAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGATTAGGTAAGACAACCATTGCGAGAGCTTTATTTGACAAATTATCATCTCAATTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGGAAGAACATGAAAAGAAAGGACTTGATTATTTGCGCAATAAGCTTCTTTCTGAGATATTAGAAGATGTGAATCCCCATATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTACTTGATGATGTGGACGATCCAAAGAAACTCGAAGATCTTGTTGCACAACATGGTTGCTTGGGATCTGGGAGTAGGGTCATTGTCACCACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGACTGTCCCTTGATCATGCTGTTAGGCTTTTTAGTTTAAAGGCCTTCGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAGGCGGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTATGAGAAAATTCAAGAAGGTTCCTAATACTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAGAACATGTTCCTGGACATTGCATGCTTTTTCCGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGACATTTGTGGTTTCTATGCATATATCGGTATAAAAATCCTTTTAGAAAAAGGTCTTATAACTTTTTCTGATGATGGTGACGTCTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAATCTATCAAAGATCCTGGAAGGCGCAGCCGACTGTGGGATCTTAAGGACGTCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTGTGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGGGTAGAAAATGCAATTTGCACCTTCCTTCTGGTCTCCAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTCCTGACAACCTTGTTGTGCTTTCCATGATGGAAAGCCACGTTGAGAAACTTTGGGATGGAACCAAGTGTCTTCCAAGCTTGAAAGAGATGAACCTCCATGCCAGCAAAAAATTAACTAATCTCCCAGATTTATCTCAGGCACCAAATCTTGAAACTATAGATGTTTCGAGTTGCACAAGTCTGCTTCATGTTCCCTTATCCATCCAATATGTCAAGAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTCAAGAGTCTTCCAAGAAACATTCACTTATCTTCTCTTGGGATGTTCATTCTCAGACGCTGTTCTAGTCTTGATGAGTTTTCATTGACTTCGGAGAACATGACACGCCTAGACTTGAGAGAAACAAAAATAGCAGATTTCCCAGAGTCTGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAACAAACTAAAGAGTCTTACAAGCAAGAGTCACTTAAAATCTCTTCAAAGACTCAATCTGAGAGATTGTTCAATTCTCGAAGAGTTTTCTGTGACTTCGGAGAGCATGGAATACTTGAATTTGAGAGGCACATCAATAAGAGAATTGCCAACATCAGTTTGGCGCAATAACAAGCTTTATACTTTGGTTCTTCATTCCTGTAAAAAACTGGTGAATTTTCCTGAAAGACCAAAACTTGAGGATTTACCTCTCGTATCCTCCTCTGAAAGGCCAAATATGGATGAACTATGGACTTTGTCATCCTTAGCAGATTTGTCACTAAAAGGAAGCACGGTTGAGAATTTACCTGAAAGCATCAAAGATCTTCCTAGTCTAAAAAAACTTACCTTGACTGAGTGCAAGAAGCTGCGATCATTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTAATATTGTGTGCTTACCTGTAAGTATCAAAGATCTTTCCCATTTGAGAAAACTTGCCCTAATTAACCACAAGAAGCTTTTGACTCCATTACTCAGTGAAAGTAAAGTTGATCCACAACTTGTGAGCATGAAAGGTCTTTCTCAACTACAGATGTTTCCTCAGGTTAAGTGGAAAATGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTAAGTTCATACCTGAAAGCATTAAAAATCTTTCACATATGAGGAAACTAGCCTTCACAAAGTGCACGAGGCTGCAGTATTTACCAGAGCTTCCGCCAAATTTGGAAGATTTGTTTGTAAGTGGATGTGACATTGAAAGCTTGCCAACAAGCATCAGAGATGTAGTTCACTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCAAGGCTCTACCAGAGCTTCCACAGTGCCTGCAATCATTGTGTGCAGCTGACTGCACATCACTTAAGATTGTTCGAAGTACAAAGAATATCTTAATAGAAGATAGGTATACATTCTATTGGAATTGCATAAACTTAGACCAAAAGTCACGCAACAACATCATTGCAGATGCACCCTTTGAGGAAGCCTTTACTTCTTTGAAAGAAAGAACACCTCTTGGTCCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCCACCAATCAACAAATTCTTCACTGGACATGGAAATTCCTCTTGAGTGGTTCGTTGACTCGATGTTCTTAGGTTTTGCTCTGTGCCTTGTAATTGGTGGTTTCCAGCAGAACAGTTATGAAGGGTATGATCCAGATATCAATTGTTATCACTTTGTAAAACCTGCCTCCTACTCTGGCCCCAGTGTTCCCTTTCTTGGACATTGCACAACTGTAATGCAGGTCCCAAGAGGTTTTAATTCAGATCATATATTTATATGCTACTATCCCTCTTTTAATGCCTCCATATTACAAGATTTCAAGGATTTAAGCTTGTACTATGATGCCAATGACTTAAGACTCAGAGTAATCTTTAAATTCAAGGGTCCATCTCAAAGGTTGGACATTGTTAAGAAGTGCGGGGTCAGACCTCTTTTGATCGCAAATACTGAAAGGCTTCACATAGAAAGTGAACTGCAACCTGAATAG 4320 0.3975 MLSVRPVLTLGLLKRTSSFDKVFGYYRKKGVLSFGRVLSMNMDSEIHGVHPEILMITSSQVEMGKSCADGFPVTTSPGCTNGHKLNIHAVRTMSKWSVQPYLVETKVKVSSSMLAGDSKSSSRLRQSSCSCPPRMVKISAQPSSSSSFSSTARLKRHDVFISFRGEDTRNSFTSHLYAAFQHKNIQAFIDNRLQKGDVISPSIFEAIKHSNVSLVVLSKHYASSTWCLRELAKILQLRKRGGHIVIPVFYKIDPSYVRKQTGTYGMAFQKYKEDVKQNMAMLQKWKAALTEVADIVGWESKNFRYNRYTEIVKDVMQKLNHMYPTEVKTLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIARALFDKLSSQFEASCFLANVMEEHEKKGLDYLRNKLLSEILEDVNPHISTSKVRSTFVMKRLRQKKVLIVLDDVDDPKKLEDLVAQHGCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDHAVRLFSLKAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNAMRKFKKVPNTEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLDICGFYAYIGIKILLEKGLITFSDDGDVCMHELIQEMGWEIVHQESIKDPGRRSRLWDLKDVYDVLKNNRGTEAVEGIILDVSQIRVLLLSCETFSRMINMRFLKFYMGKGRKCNLHLPSGLQSLPNKLMYLQWDGYPSKSLPSTFCPDNLVVLSMMESHVEKLWDGTKCLPSLKEMNLHASKKLTNLPDLSQAPNLETIDVSSCTSLLHVPLSIQYVKKLLLFNLESCKSLKSLPRNIHLSSLGMFILRRCSSLDEFSLTSENMTRLDLRETKIADFPESVWQHLNKLVYLNLESCNKLKSLTSKSHLKSLQRLNLRDCSILEEFSVTSESMEYLNLRGTSIRELPTSVWRNNKLYTLVLHSCKKLVNFPERPKLEDLPLVSSSERPNMDELWTLSSLADLSLKGSTVENLPESIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESNIVCLPVSIKDLSHLRKLALINHKKLLTPLLSESKVDPQLVSMKGLSQLQMFPQVKWKMFHSLPELPPFLEEFSLSESNIKFIPESIKNLSHMRKLAFTKCTRLQYLPELPPNLEDLFVSGCDIESLPTSIRDVVHLRKITLIECKKLKALPELPQCLQSLCAADCTSLKIVRSTKNILIEDRYTFYWNCINLDQKSRNNIIADAPFEEAFTSLKERTPLGPLISICLPGTEIPDWFSHQSTNSSLDMEIPLEWFVDSMFLGFALCLVIGGFQQNSYEGYDPDINCYHFVKPASYSGPSVPFLGHCTTVMQVPRGFNSDHIFICYYPSFNASILQDFKDLSLYYDANDLRLRVIFKFKGPSQRLDIVKKCGVRPLLIANTERLHIESELQPE 1439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02204 1439 Gene3D - 487 570 IPR042197 -
Vimu11g02204 1439 SUPERFAMILY Toll/Interleukin receptor TIR domain 152 298 IPR035897 -
Vimu11g02204 1439 ProSiteProfiles TIR domain profile. 155 319 IPR000157 GO:0007165
Vimu11g02204 1439 Gene3D Ribonuclease Inhibitor 862 1071 IPR032675 -
Vimu11g02204 1439 SUPERFAMILY "Winged helix" DNA-binding domain 556 663 IPR036390 -
Vimu11g02204 1439 ProSiteProfiles Leucine-rich repeat profile. 884 906 IPR001611 GO:0005515
Vimu11g02204 1439 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 157 855 IPR044974 GO:0006952
Vimu11g02204 1439 Gene3D - 317 481 IPR027417 -
Vimu11g02204 1439 FunFam Disease resistance protein (TIR-NBS-LRR class) 153 322 - -
Vimu11g02204 1439 Pfam C-JID domain 1275 1382 IPR045344 -
Vimu11g02204 1439 SUPERFAMILY L domain-like 645 967 - -
Vimu11g02204 1439 SUPERFAMILY L domain-like 928 1217 - -
Vimu11g02204 1439 FunFam Disease resistance protein RPS4 668 859 - -
Vimu11g02204 1439 Gene3D Ribonuclease Inhibitor 655 861 IPR032675 -
Vimu11g02204 1439 Pfam Leucine Rich Repeat 746 765 IPR011713 -
Vimu11g02204 1439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 580 IPR027417 -
Vimu11g02204 1439 SMART till_3 156 295 IPR000157 GO:0007165
Vimu11g02204 1439 Gene3D - 154 316 IPR035897 -
Vimu11g02204 1439 PRINTS Disease resistance protein signature 1013 1029 - -
Vimu11g02204 1439 PRINTS Disease resistance protein signature 353 368 - -
Vimu11g02204 1439 PRINTS Disease resistance protein signature 429 443 - -
Vimu11g02204 1439 PRINTS Disease resistance protein signature 521 535 - -
Vimu11g02204 1439 Pfam NB-ARC domain 343 556 IPR002182 GO:0043531
Vimu11g02204 1439 Pfam TIR domain 157 330 IPR000157 GO:0007165
Vimu11g02204 1439 Gene3D Ribonuclease Inhibitor 1072 1226 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02204 Vimu-Chr11 38483481 38489894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02204 134 946 WRKY Transcription Factor Family AT4G12020 35.740 4.64e-122 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02204 - - gmx:100797269 2117.04