Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02161 ATGGCCAATAGAACTATTTCCTCAAAGTTTAACTTTCAAAAGGAATCTATAGAAGATGTAATTTCATTAGAATCAGAAAGACCAATAGTATACAACCTTGAGGAGATTGAAGAGGCTACGAATAACTTTGATGAAAGTCGAAAAATAGGAAGTGGTGGATACGGAAGTGTTTATTTTGGAGTGTTAGGGAACAAGGAAGTTGCTGTGAAGAAAATGAGGTCCAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTATGTAAGATCCACCATATCAACATTTTAAGTAACAATTCTGATGATATTTTCTTTGACGAGGTGGAGCTGTTGGGATATGCAAATGGAAAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTGAAAGGTCTTGAATATATACATGATTATACAAAAGCACGATATGTGCACCGTGACATAAAGAGTAGCAATATTCTACTTAAGGATAAATTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGACAGAACCGATGATGAAAATTTTATTACAACCAGACTTGTAGGAACACCGGGCTACCTTCCACCAAAGGAGCTTCAAGTGACTCCAAAAACCGATGTGTTTGTGTTTGGAGTGGTGCTTTCAGAGCTGTTAACAGGGAAACGAGCATTATTCCGAAAAAGACAAGAAGAGATTAAAATGAAATCACTCATTAGTGTTGTTAATAAAATATTCCAAGATGATGAACCAGAGATTGCCTTGGAAGATGCCATAGATAAGAATCTGGAAGCAAGCTATCGGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATAGAGAGGCCTGAAATGAGGGATATAATTGGGGCACTGTCTCAGATTGTGATGTCCTCAATAGAGTGGGAAGCATCCCTGTGTGGAAATAGCCAGGTCTTCAGCGGGCTGTACAGTGGAAGATGA 1014 0.3876 MANRTISSKFNFQKESIEDVISLESERPIVYNLEEIEEATNNFDESRKIGSGGYGSVYFGVLGNKEVAVKKMRSNKSKEFYAELKVLCKIHHINILSNNSDDIFFDEVELLGYANGKDDLYLVYEYVPNGSLSDHLHNPLLKGLEYIHDYTKARYVHRDIKSSNILLKDKFRAKVGDFGLAKLVDRTDDENFITTRLVGTPGYLPPKELQVTPKTDVFVFGVVLSELLTGKRALFRKRQEEIKMKSLISVVNKIFQDDEPEIALEDAIDKNLEASYRMEDVYKMAEIAEWCLQEDPIERPEMRDIIGALSQIVMSSIEWEASLCGNSQVFSGLYSGR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02161 337 SMART serkin_6 43 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02161 337 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 331 IPR044812 GO:0019199|GO:0045087
Vimu11g02161 337 Pfam Protein kinase domain 44 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02161 337 FunFam PTI1-like tyrosine-protein kinase 3 127 323 - -
Vimu11g02161 337 Gene3D Phosphorylase Kinase; domain 1 25 126 - -
Vimu11g02161 337 SUPERFAMILY Protein kinase-like (PK-like) 26 309 IPR011009 -
Vimu11g02161 337 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Vimu11g02161 337 Gene3D Transferase(Phosphotransferase) domain 1 127 323 - -
Vimu11g02161 337 PIRSF ILK 22 324 - -
Vimu11g02161 337 ProSiteProfiles Protein kinase domain profile. 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02161 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02161 Vimu-Chr11 37376472 37378437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02161 23 337 Receptor kinase-like Gene Family AT1G51940 45.773 2.00e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu11g02161 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02161 - - gmx:100791718 559.681