Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02149 ATGCCTATCATCAGGATCGCCAAAGTCTTCCAACTAAAGCGGGAGCTGGGTCACAAGTCAGACGGTCAGACCATCGAGTGGCTCCTGCGCCAGGCCGAGCCTTCCATCATCGCCGCCACCAGCACAGGCACCATGCCCGCCAGCTTCTCCTTTGTCTCCCTCTCTGTATGTGCCGCCAACTCCGCGCCTCTCTCCTTGCCTTCCTCCGCCTCCGACCACAAGTCGCAGCTCCTCGCTCCCACGCCCTTCATCCTCGGCAAGCACATATGCACTGACGATGACACTTCCAAGAATGACGTCGTTTTCGTGGCCCCTCCCTCGTGGGCCCCTCCACCCCGCCCGAACAGTGGGCCATCCCTGCTCGCACCGATTTCAGACAAATGTGGAGCTTTATCGCTGCTCCAAAAATGGTTGTGCAGCCCGCCACCATGTCGGTGTCGCAACAACAGGCGTCGCTCTTTGCTCATCACCAATGTCAACAACAGCAGGCCATTGGAGAAGCGTCGACGGCTAGGGTGGGGAATTACCTTCCGGGACATCTGA 543 0.5912 MPIIRIAKVFQLKRELGHKSDGQTIEWLLRQAEPSIIAATSTGTMPASFSFVSLSVCAANSAPLSLPSSASDHKSQLLAPTPFILGKHICTDDDTSKNDVVFVAPPSWAPPPRPNSGPSLLAPISDKCGALSLLQKWLCSPPPCRCRNNRRRSLLITNVNNSRPLEKRRRLGWGITFRDI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02149 180 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Vimu11g02149 180 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 73 IPR005333 GO:0003700
Vimu11g02149 180 Pfam TCP family transcription factor 1 61 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02149 Vimu-Chr11 37114378 37114920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02149 1 117 TCP Transcription Factor Family AT5G23280 54.264 3.34e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu11g02149 TCP 9.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02149 K16221 - gmx:100799005 140.969