Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02121 ATGGCCCTGACTTGGTGGCTGCGGCACCGAGGGTTTCCTTCGCGTGAAGAAAAGGAGAAGAGGATTAGTACGATGGTTGGCGATGGGTCCGGCGATGGGCGGTATCCTCGTGGTGGCGGACTCGTGGCGAAGGGGAGATCACACACGCCTAAGAGGAAACTGCTGCCCATTTATTTCAGTTTGTGCGAGTGGAATTGCAAAAAACAACATGGTAGAGAGAGAATAATGAAGCTGGAAGAAGGCTTGGCAGAACCGTTAGCCAGACAAGGATCGAGAATTAAGAGTTGCGAGGGAGAAAACAGAGAAGCGGAAAAAGTGTATGAAACTGCCATTAATGACTTCTTTGTTTGTTTCCTCTCCAACACTTGCTTATTAAGCTCCGACACCCATCACCCTCTGCGATCTCACCCTTCAAACCATAATTCTCAACCTCCCAAAATGGATTTCGAGGACCATGACGAAGCTCAGTTGGGGATGCCTGGGTCCACCTATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCAACTCAGACCCCCCAGGAAGACCCCCTGCCGCCGGCGGCCACTCCACCACCCACCATCAACCGAAACAACGCCAGGGGAAAGTACAAAGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGGCGGCGGGCGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCGTCGGAGAGCTCCTTCCTAATGCCCTTCCAGCACCGTCGCCACCAGCCGCCGCCACAGTTCGCGGCGGCTTACTACAGGGCCCCGGCGGGGTACTTGCAGGTGGCGGGGCCGCATCGTGGAGGCCTTGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAGAAGCACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGTGTTCAGCGTCACGTCCTCAAGTTACCATCACAGCCACCATTCCAAGCTGGAAGCTCAACGTTGAAGCTGGGAAATTGCGTTGCTGAATGTCTGACAAGTCCGTTAGCACTAGCTCATCAGGATCATAGTTCTTAG 1263 0.5622 MALTWWLRHRGFPSREEKEKRISTMVGDGSGDGRYPRGGGLVAKGRSHTPKRKLLPIYFSLCEWNCKKQHGRERIMKLEEGLAEPLARQGSRIKSCEGENREAEKVYETAINDFFVCFLSNTCLLSSDTHHPLRSHPSNHNSQPPKMDFEDHDEAQLGMPGSTYDHSPFNPCRVKMPTQTPQEDPLPPAATPPPTINRNNARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPSESSFLMPFQHRRHQPPPQFAAAYYRAPAGYLQVAGPHRGGLATLALPSTSGAGGGAQSPREDQEDVSDPSGGGSGSNKKRFRTKFTLEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKLPSQPPFQAGSSTLKLGNCVAECLTSPLALAHQDHSS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02121 420 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 205 254 IPR006456 -
Vimu11g02121 420 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 184 384 - -
Vimu11g02121 420 SUPERFAMILY Homeodomain-like 324 383 IPR009057 -
Vimu11g02121 420 Coils Coil 93 113 - -
Vimu11g02121 420 MobiDBLite consensus disorder prediction 130 144 - -
Vimu11g02121 420 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 204 254 IPR006456 -
Vimu11g02121 420 MobiDBLite consensus disorder prediction 298 338 - -
Vimu11g02121 420 Gene3D - 319 384 - -
Vimu11g02121 420 MobiDBLite consensus disorder prediction 130 201 - -
Vimu11g02121 420 Pfam ZF-HD protein dimerisation region 204 254 IPR006456 -
Vimu11g02121 420 NCBIfam homeobox domain, ZF-HD class 334 383 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02121 Vimu-Chr11 35700399 35702972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02121 201 384 ZF-HD Transcription Factor Family AT4G24660 52.356 6.82e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu11g02121 ZF-HD_dimer 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02121 - - gmx:100798992 287.73