Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02118 ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATGACATGTGCTTTGATGATTTTGAATGTAATGTTGCAGATGAGTCTCCTTCCTGGGACCACAAAAATCCTAACTTTAACAATCAATGTCTGATTGAGGACAATCTTGGATCGGAACATGTATTGGATTCTCCTGTACTGAGTGATGAAATAGTTTTGGGTTTGATTGGGAAGGAGAGGGAACTTTTGCCCCGGGATGATTACCTCGAGAGGCTGCTCGGTGGGGACTTGGACTTGAGTGTTAGGAGGAGGCAGGCTCTTGATTGGATTTGGAAGGCTCATGCACACTATGATTTTGGACCCTCTAGCTTATGTCTATCTGTGAATTACTTGGATCGGTTTCTATCGGTGTATGAATTACCAGGAGGCAACAGTTGGAGTGCACAATTGTTAGCTGTGGCATGTCTGTCAATTGCTGCCAAAATCGATGAGATTAAAGTGCCTTCTTGTATAGATATACAGGTTGGAGAACCTAAGTTTTTATTTGAAGCTAAAACCATTCAAAGAATGGAACTACTGGTATTGAGCACATTGAAATGGAAAATGCAAGCTTTAACTCCGTTTTCCTTCGTAGATTACTTCATCAAGAAGATCACCTGTGACCAACTTCTAGAAAAGTCATCCATTCTGAGATCAGTTGGGCTCATTTTTGACATAATTAGATGTATCAATTTCTTGGAATTCAAGCCTTCTGAAATTGCCGCAGCAGTGGCAATTTCTGTGTCAAGGAAATTGCAAGCAGAAGAGATTGATGAAGCCTTAACATGTTTTGTCACTGTAGGAAAGGAAAGAATTTTGAAGTGTGTTGAATTGATTAGAGATTTGCCCTTGATCCAAGCTTCTACTAATTTGGGCAACAACTTAGCACCATTGGTACCTCAAAGCCCTATTGGTGTACTGGATGCTGCATGCTTGATCGCTATAAGTGATGAGTTAACATTTGGATTATCTACAGATTATTCGCCTGATACTCCAAATTCTAAGAGGATGAAAACTTCTGACCCTCTTGATGGGACTTTCAAGTCATGA 1080 0.4074 MEESIDPATSSLLCLENNDMCFDDFECNVADESPSWDHKNPNFNNQCLIEDNLGSEHVLDSPVLSDEIVLGLIGKERELLPRDDYLERLLGGDLDLSVRRRQALDWIWKAHAHYDFGPSSLCLSVNYLDRFLSVYELPGGNSWSAQLLAVACLSIAAKIDEIKVPSCIDIQVGEPKFLFEAKTIQRMELLVLSTLKWKMQALTPFSFVDYFIKKITCDQLLEKSSILRSVGLIFDIIRCINFLEFKPSEIAAAVAISVSRKLQAEEIDEALTCFVTVGKERILKCVELIRDLPLIQASTNLGNNLAPLVPQSPIGVLDAACLIAISDELTFGLSTDYSPDTPNSKRMKTSDPLDGTFKS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02118 359 SUPERFAMILY Cyclin-like 184 295 IPR036915 -
Vimu11g02118 359 SMART Cyclin_C_2 202 325 IPR004367 -
Vimu11g02118 359 FunFam D2/4-type cyclin 82 195 - -
Vimu11g02118 359 Gene3D - 73 288 - -
Vimu11g02118 359 PANTHER CYCLINS 66 290 IPR039361 -
Vimu11g02118 359 FunFam D6-type cyclin 196 287 - -
Vimu11g02118 359 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
Vimu11g02118 359 MobiDBLite consensus disorder prediction 339 359 - -
Vimu11g02118 359 Pfam Cyclin, N-terminal domain 72 199 IPR006671 -
Vimu11g02118 359 SUPERFAMILY Cyclin-like 58 199 IPR036915 -
Vimu11g02118 359 Pfam Cyclin, C-terminal domain 203 293 IPR004367 -
Vimu11g02118 359 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Vimu11g02118 359 SMART cyclin_7 105 193 IPR013763 -
Vimu11g02118 359 Gene3D - 82 200 - -
Vimu11g02118 359 CDD CYCLIN_AtCycD-like_rpt2 203 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02118 Vimu-Chr11 35495889 35497860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02118 65 270 Core Cell Cycle Gene Families AT5G65420 56.039 2.51e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02118 K18810 - gmx:100800570 504.597