Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02107 ATGGAGGAGAAAAAAGACACAGACAAGGACGGAACCGCAGACTCCGACACCCTCTCCATGTTTCGCCCTGCGCTTTCCCTTCTCAACCGTCGCAGCTTCATCGCCTGTCGTGATTTCACTCTGAAGATCGTCAGATCCGACCCCAACATCTCCCTGCAAATCGACCAAATCGTTGCCGTTGCCGATGTTCTTGCCGCCGCAGAGCGCCGCCATGACCCGCTTGACTGGTACTCCATTTTACGTCTCAGTCCTAGAAACGCTACTGCGGACCGTGATTTCGTACGACAACAGTTCAAGATCCTAGTGCGTCTCCTGGATCCTAATAAGAACAAGTTTCCCTTTGCCGACGAGGCCCTCATGCGTGTCCGCGAAGCCTGGTGTGTTCTCTCTGACCCCACACTAAAGGAAAGTTTTGACAGAAAGGTTCAAGAGGAGGCTTCTTCGTTTTGGACAATGTGCCCCTACTGCTGGTATCTCCACGAATACCAGAGGTGTTACGAGGATTGCTCGCTGAGGTGCGCCAATTGCCAGAAGACGTTTCACGGCACCGCGGTGAAGCCCCCTCCGCCGGAGTCAGTAGTGGTGGGGAAGGAGGAGTACTACTGTTACCACGTGAGTTTTCCGCTCAGGTATCCCGTTGGTGATGGGCGTAGCTTTGTTGACGAGGAGAATGGAATGCGGAAGAGGTTGAGGGTTAAAACAGTGGCTAATAGGACTAGAACTAGAACGAAAGGGGTTGTTCATGTCCTTGCTGACTCCGATTCAGACGGGGAAGAGAAAGATAAGGGAAAATAA 795 0.5245 MEEKKDTDKDGTADSDTLSMFRPALSLLNRRSFIACRDFTLKIVRSDPNISLQIDQIVAVADVLAAAERRHDPLDWYSILRLSPRNATADRDFVRQQFKILVRLLDPNKNKFPFADEALMRVREAWCVLSDPTLKESFDRKVQEEASSFWTMCPYCWYLHEYQRCYEDCSLRCANCQKTFHGTAVKPPPPESVVVGKEEYYCYHVSFPLRYPVGDGRSFVDEENGMRKRLRVKTVANRTRTRTKGVVHVLADSDSDGEEKDKGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02107 264 SMART dnaj_3 74 134 IPR001623 -
Vimu11g02107 264 Pfam DnaJ domain 75 139 IPR001623 -
Vimu11g02107 264 CDD DnaJ 75 131 IPR001623 -
Vimu11g02107 264 Gene3D DnaJ domain 74 148 IPR036869 -
Vimu11g02107 264 ProSiteProfiles dnaJ domain profile. 75 142 IPR001623 -
Vimu11g02107 264 SUPERFAMILY Chaperone J-domain 70 141 IPR036869 -
Vimu11g02107 264 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 18 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02107 Vimu-Chr11 35193291 35195139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02107 24 216 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.866 5.35e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02107 - - var:108337473 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02107 11 35193291 35195139 Vimu11g02107 11 35193291 35195139 PCT