Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02094 ATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAACTTTTATGCTACCAATGAGTGGACAAATTCCAAGGGATTAATGGATTCTGAGAGTGAAAACCAGCCACTACTGGTGCCGAAAGCGGAAGATTTTTTTGAGAACCAAACTGAGACGCAACAAGACGATTCTTCGCTGACCCAAATTTACGACCATGGCTCTGCCTCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCGATTCCAGGGTTTCAAGCATTCTCGGGTACCAACTCGAGCTCTGAGTTGGATGACTCGGTCTCAGACAAGACCACTCATGTTGCACCAGCTGAGCTAGGTGCCCACTCAGGAGAATCAAGCAAAGGAGCTTTGTCTTTATGTGATGCTGCTGCACATGACAAAGCCATCATTGCGGTGGAGTTTGCTACGCCTAAGAAGGTTTCTCATACTATTGGCCAGAGAACTTCAATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGGAAAGCTGGGTTTGACCACAACATCATTTCTCGCTCACTGTATTGAAATTTGCACTTACATGAATGTGGAGGGAGTCCCATGTTTGGCTGAAAGGTTAAATTTGATTTTTCATGTCTTTTTCATTGCTGTTTCTTTGCATGGAATGTGGCATTGCGCACTTCATCGCTGTGTCGCACGTCCTTTGACTGTTTCTACAGTGTACTTGGGTGGATATGACAAGGAAGAAAAGGCTGCTAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATACAGGAAAACAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCCGCATACAGGGGGGTTACGAGGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGGCAAGTTTATACCCTATCTTGTTTCAACACTCGACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCCGTAACAAATTTTGAGATGAGCAGATATGATGTGGATAATATATTGAATAGCTCTCTTCCAGTTGGTGGGGTGGCGAAACGATTGAAGCTTTCCTCCCCAGAGTCGGAGAAGAAAGTTAGTGTTACTGATGAACAACCCGAGGGCACAAACGAGAGTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCAAACGCGTACCCACAAAACCTTTTCCACCAGTTTCATCATTCCAACAGTGGAAGTAGCTCAGTACAAGAGTCTGATGCAATTGTGACCAATGCAACTGCACTGACCATCCTTCCACCACCACCTGCTGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTAA 1581 0.4617 MAGATNWLTFSLTPMEMLRSPDSSSHCMLDNFYATNEWTNSKGLMDSESENQPLLVPKAEDFFENQTETQQDDSSLTQIYDHGSASVYFGDQQDLNAIPGFQAFSGTNSSSELDDSVSDKTTHVAPAELGAHSGESSKGALSLCDAAAHDKAIIAVEFATPKKVSHTIGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGKLGLTTTSFLAHCIEICTYMNVEGVPCLAERLNLIFHVFFIAVSLHGMWHCALHRCVARPLTVSTVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPISNYTKELEEMKHTGKQEFIASLRRKSSGFSRGASAYRGVTRVDGKQESAELRETRIYIWEHLASLYPILFQHSTEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVDNILNSSLPVGGVAKRLKLSSPESEKKVSVTDEQPEGTNESSTINFSAIQPVASIPYDSANAYPQNLFHQFHHSNSGSSSVQESDAIVTNATALTILPPPPAVPGFFLWPPQSF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02094 526 SUPERFAMILY DNA-binding domain 341 408 IPR016177 GO:0003677
Vimu11g02094 526 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 Gene3D AP2/ERF domain 342 408 IPR036955 GO:0003700|GO:0006355
Vimu11g02094 526 ProSiteProfiles AP2/ERF domain profile. 342 406 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 CDD AP2 341 408 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 SUPERFAMILY DNA-binding domain 254 308 IPR016177 GO:0003677
Vimu11g02094 526 SMART rav1_2 174 312 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 SMART rav1_2 342 412 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 CDD AP2 173 308 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 ProSiteProfiles AP2/ERF domain profile. 174 306 IPR001471 GO:0003700|GO:0006355
Vimu11g02094 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 475 - -
Vimu11g02094 526 MobiDBLite consensus disorder prediction 434 454 - -
Vimu11g02094 526 Gene3D AP2/ERF domain 174 308 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02094 Vimu-Chr11 34904359 34909137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02094 274 459 AP2-EREBP Transcription Factor Family AT5G57390 59.358 3.16e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02094 K09285 - gmx:100814405 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02522 7 21473439 21476946 Vimu11g02094 11 34904359 34909137 PCT