LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02093	ATGAGCTGGTATGGTCTCCTCCTCCTCCTTCCAAGAATAACCACCACTCAAAGATATACCAATTTTGAATTACACCACCTTCTTCTCTCTTATCCCCGCTGCTCCAATCCACCACCTAACGCCCTCATCAGAAGGAAAAATGAGATGGAGAAAGTAGAGAAAAAGGGAAAAGAAACCAAAGAAAAGAAATGGACGCGGAAACTGGAGTTACCGTCGATAATGGGGAACCCGAAGAAAGAGGTTGCATTCGACGACGACATATTGGCGTCACCGAGGGATGTATTTGGGGTGGCCGTTTCGGGGACGGATTCGGACAGCACGGGGAGCAGCAACTACAATGGGCTTGGATCGCCCGGGGTGGTCTCAAATCGGTGCCTGAGAGACCCGCAGAACCAGCAATGGAAGACGATGATCGACGTGTTGAGGTTCAAGTCCGTTAGAAGATTCTCGACTATTCCTCTGCTTGGGGCGAGTTACGAGATCTCGCGCCGGAGCCTGAGGAACAAGTTGGCTCGTATTCGACCTGCCAATGACGACGATGATTTGGATTCTTGTATTGACATTGACGGCATTGCCACCAAGCCTTCTTGGAGAAACTTCAATTACGCTGACCTCGTTGCTGCAACCGACGATTTCAACCCTGGGAACATGATCGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTACCTGATGGTCGAGTTGTAGCAGTTAAGAGGCTAATGAGGAATGAAAAGGACATCGAGGATACTGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATTAACCACCCAAATGCAACACGCTTGATAGGGTTTGGGATTGACCAAGGTCTCTATTTTGTTCTACAATTGGCCCCACATGGCAGCCTTGCCTCTATGCTGTTTGGTGCAGTTCTGCCTCTACTCCCACTTCTCATTTCATCTCTTCTACTTTCAAGCATAGACAGACTCCCTATGAATAGTGTTAAGGTTACATGGCTAATAAAAGTGACACGTAATATTTCAGGACCTGAATGTCTGGAGTGGAATATAAGGTTTAAAGTGGCTGTTGGGGTTGCAAAAGGATTACAGTATCTCCACCACGATTGCCCGAGAAGAATCATTCACAGAGACATCAAAGCCTCAAATATATTACTCAACAACGATGATGAAGCTGAGATATCAGACTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCTCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGATATTTAGCTCCGGAGTACTTTATGCATGGAATAGTTGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTCGAGCTTATAACAGGGCGTCGAGCAGTTGATTCAAATAGCAGGGAAAGTCTTGTGATCTGGGCCAAACCACTTCTGGATGCAAAGCTGGTCGAAGAATTGCTAGACCCCAGATTAGGAGCTAATTATGATCTGGCCGAAATGAAGTGTTGCATGGCAACGGCTTCCTTGTGCATCCATCACATGTCCTCTAAGCGGCCATACATGGATCAGGTTGTGCAGCTACTGAAAGGAGAAGAGGTGCCAGTAGAACTGAATCACAACTCACCTACTCCAAGATCACTCTTGATAGATGCATGTGACCTGGAAGATTACACTTGCTCTAACTATTTGAACGACCTGAATCGCCACAGGCAATTACTGATGGAGTGA	1701	0.4633	MSWYGLLLLLPRITTTQRYTNFELHHLLLSYPRCSNPPPNALIRRKNEMEKVEKKGKETKEKKWTRKLELPSIMGNPKKEVAFDDDILASPRDVFGVAVSGTDSDSTGSSNYNGLGSPGVVSNRCLRDPQNQQWKTMIDVLRFKSVRRFSTIPLLGASYEISRRSLRNKLARIRPANDDDDLDSCIDIDGIATKPSWRNFNYADLVAATDDFNPGNMIGKGGHAEVYKGCLPDGRVVAVKRLMRNEKDIEDTVGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLASMLFGAVLPLLPLLISSLLLSSIDRLPMNSVKVTWLIKVTRNISGPECLEWNIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNNDDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKLVEELLDPRLGANYDLAEMKCCMATASLCIHHMSSKRPYMDQVVQLLKGEEVPVELNHNSPTPRSLLIDACDLEDYTCSNYLNDLNRHRQLLME	566

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu11g02093	566	ProSitePatterns	Protein kinases ATP-binding region signature.	218	240	IPR017441	GO:0005524
Vimu11g02093	566	SMART	serkin_6	212	492	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu11g02093	566	Gene3D	Phosphorylase Kinase; domain 1	186	287	-	-
Vimu11g02093	566	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	187	289	-	-
Vimu11g02093	566	Gene3D	Transferase(Phosphotransferase) domain 1	331	531	-	-
Vimu11g02093	566	SUPERFAMILY	Protein kinase-like (PK-like)	196	535	IPR011009	-
Vimu11g02093	566	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	372	384	IPR008271	GO:0004672\|GO:0006468
Vimu11g02093	566	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	335	533	-	-
Vimu11g02093	566	Pfam	Protein tyrosine and serine/threonine kinase	215	517	IPR001245	GO:0004672\|GO:0006468
Vimu11g02093	566	ProSiteProfiles	Protein kinase domain profile.	212	524	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02093	Vimu-Chr11	34865755	34869196	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02093	172	542	Trihelix Transcription Factor Family	AT5G38560	36.053	1.63e-63	219

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Vimu11g02093		PK_Tyr_Ser-Thr	3.6e-35	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02093	-		-	gmx:100794225	745.347

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