Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02093 ATGAGCTGGTATGGTCTCCTCCTCCTCCTTCCAAGAATAACCACCACTCAAAGATATACCAATTTTGAATTACACCACCTTCTTCTCTCTTATCCCCGCTGCTCCAATCCACCACCTAACGCCCTCATCAGAAGGAAAAATGAGATGGAGAAAGTAGAGAAAAAGGGAAAAGAAACCAAAGAAAAGAAATGGACGCGGAAACTGGAGTTACCGTCGATAATGGGGAACCCGAAGAAAGAGGTTGCATTCGACGACGACATATTGGCGTCACCGAGGGATGTATTTGGGGTGGCCGTTTCGGGGACGGATTCGGACAGCACGGGGAGCAGCAACTACAATGGGCTTGGATCGCCCGGGGTGGTCTCAAATCGGTGCCTGAGAGACCCGCAGAACCAGCAATGGAAGACGATGATCGACGTGTTGAGGTTCAAGTCCGTTAGAAGATTCTCGACTATTCCTCTGCTTGGGGCGAGTTACGAGATCTCGCGCCGGAGCCTGAGGAACAAGTTGGCTCGTATTCGACCTGCCAATGACGACGATGATTTGGATTCTTGTATTGACATTGACGGCATTGCCACCAAGCCTTCTTGGAGAAACTTCAATTACGCTGACCTCGTTGCTGCAACCGACGATTTCAACCCTGGGAACATGATCGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTACCTGATGGTCGAGTTGTAGCAGTTAAGAGGCTAATGAGGAATGAAAAGGACATCGAGGATACTGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATTAACCACCCAAATGCAACACGCTTGATAGGGTTTGGGATTGACCAAGGTCTCTATTTTGTTCTACAATTGGCCCCACATGGCAGCCTTGCCTCTATGCTGTTTGGTGCAGTTCTGCCTCTACTCCCACTTCTCATTTCATCTCTTCTACTTTCAAGCATAGACAGACTCCCTATGAATAGTGTTAAGGTTACATGGCTAATAAAAGTGACACGTAATATTTCAGGACCTGAATGTCTGGAGTGGAATATAAGGTTTAAAGTGGCTGTTGGGGTTGCAAAAGGATTACAGTATCTCCACCACGATTGCCCGAGAAGAATCATTCACAGAGACATCAAAGCCTCAAATATATTACTCAACAACGATGATGAAGCTGAGATATCAGACTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCTCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGATATTTAGCTCCGGAGTACTTTATGCATGGAATAGTTGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTCGAGCTTATAACAGGGCGTCGAGCAGTTGATTCAAATAGCAGGGAAAGTCTTGTGATCTGGGCCAAACCACTTCTGGATGCAAAGCTGGTCGAAGAATTGCTAGACCCCAGATTAGGAGCTAATTATGATCTGGCCGAAATGAAGTGTTGCATGGCAACGGCTTCCTTGTGCATCCATCACATGTCCTCTAAGCGGCCATACATGGATCAGGTTGTGCAGCTACTGAAAGGAGAAGAGGTGCCAGTAGAACTGAATCACAACTCACCTACTCCAAGATCACTCTTGATAGATGCATGTGACCTGGAAGATTACACTTGCTCTAACTATTTGAACGACCTGAATCGCCACAGGCAATTACTGATGGAGTGA 1701 0.4633 MSWYGLLLLLPRITTTQRYTNFELHHLLLSYPRCSNPPPNALIRRKNEMEKVEKKGKETKEKKWTRKLELPSIMGNPKKEVAFDDDILASPRDVFGVAVSGTDSDSTGSSNYNGLGSPGVVSNRCLRDPQNQQWKTMIDVLRFKSVRRFSTIPLLGASYEISRRSLRNKLARIRPANDDDDLDSCIDIDGIATKPSWRNFNYADLVAATDDFNPGNMIGKGGHAEVYKGCLPDGRVVAVKRLMRNEKDIEDTVGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLASMLFGAVLPLLPLLISSLLLSSIDRLPMNSVKVTWLIKVTRNISGPECLEWNIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNNDDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKLVEELLDPRLGANYDLAEMKCCMATASLCIHHMSSKRPYMDQVVQLLKGEEVPVELNHNSPTPRSLLIDACDLEDYTCSNYLNDLNRHRQLLME 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02093 566 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524
Vimu11g02093 566 SMART serkin_6 212 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02093 566 Gene3D Phosphorylase Kinase; domain 1 186 287 - -
Vimu11g02093 566 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 187 289 - -
Vimu11g02093 566 Gene3D Transferase(Phosphotransferase) domain 1 331 531 - -
Vimu11g02093 566 SUPERFAMILY Protein kinase-like (PK-like) 196 535 IPR011009 -
Vimu11g02093 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Vimu11g02093 566 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 335 533 - -
Vimu11g02093 566 Pfam Protein tyrosine and serine/threonine kinase 215 517 IPR001245 GO:0004672|GO:0006468
Vimu11g02093 566 ProSiteProfiles Protein kinase domain profile. 212 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02093 566 PANTHER OS08G0249100 PROTEIN 342 528 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02093 Vimu-Chr11 34865755 34869196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02093 172 542 Trihelix Transcription Factor Family AT5G38560 36.053 1.63e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu11g02093 PK_Tyr_Ser-Thr 3.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02093 - - gmx:100794225 745.347