Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02073 CCGGAACAAGGTGTGAAGTGCCCCAGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAACCCAGGCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAACGGGGGTGCCTTGCGCAACGTCCCAATAGGAGGGGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCCGCTTCATCCTCCTCCTCCTCCAGACTCTCCTGTGACCCTAAAGACTTTAATTTTCATGGTCTCTCAGTTCCTCCTTCCGTTGACTTCAACCTCGGAGGGATACCCTTTCCCTCCAGGCTCACTACTTTCAACACTCAACACCTCCCAACACCCCCCACTGGGGTGTTCAACCAGTTCTCTTCTTTTGGGGACGTTGCATCATCTTCCACCAGTTCTCTTTCTGCTTTGTCTGCCTTCCAGCTTGACCCTCCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTTGTTCCGCCCAACCCTGACCTCTGGGCTCTACGTAGGTCAGAGAGGGCCTCACTCTCTGATCCATTGAACAGTGCAATGCAAACCCTTCAGAACATGGAAGCCATGAACGTTCATAGCAACCTTGCTTCTTCAATTGAGTCGCTGAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGAGACAGCCAGAAAGGTGAGAGCAGCGCTGCGCTGAATGGGTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTTTCAGAACCTTGCAATTTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAATGGTGGTCCAAGTGGGGAGACAGTTACTGCATCATCCACTGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGTGGTGCCAATGTTAACCACATTAGCAACGATGCAAACAACAACAACAGCTGGACTGGTGCCCTTGCCTGGGGAGATTTGCAGCAGCAACCATACACCGCTTTGCCCTAG 1020 0.5167 PEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSASSSSSSRLSCDPKDFNFHGLSVPPSVDFNLGGIPFPSRLTTFNTQHLPTPPTGVFNQFSSFGDVASSSTSSLSALSAFQLDPPAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQNMEAMNVHSNLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSAALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPSGETVTASSTEWFFGNSFPSVSPSTSNGGANVNHISNDANNNNSWTGALAWGDLQQQPYTALP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02073 339 ProSiteProfiles Zinc finger Dof-type profile. 5 59 IPR003851 GO:0003677|GO:0006355
Vimu11g02073 339 Pfam Dof domain, zinc finger 4 59 IPR003851 GO:0003677|GO:0006355
Vimu11g02073 339 MobiDBLite consensus disorder prediction 60 75 - -
Vimu11g02073 339 ProSitePatterns Zinc finger Dof-type signature. 7 43 IPR003851 GO:0003677|GO:0006355
Vimu11g02073 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 223 IPR045174 GO:0003700|GO:0006355
Vimu11g02073 339 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02073 Vimu-Chr11 34237965 34239218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02073 1 169 C2C2-Dof Transcription Factor Family AT5G60200 42.045 1.64e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g02073 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02073 - - ccaj:109819084 385.185