Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02072 ATGGCTATTACACCAGGACTGGAGCATACAAGGAAGGCTATTGGATGGGCAGCAAGAGACACATCTGGGGTTCTTTCCCCCTTCAATTTCACGAGAAGGGAAACAGGAGAGAAAGATGTAGCAATCAAAGTGCTATACTGTGGTATATGCCACACCGACCTCCATAATGCAAAGAGTGAATGGGGTCAATCCTTTTATCCACTCGTACCCGGGCACGAGATTGCAGGTGAAGTGATAGAGGTAGGAAGCAAGGTGGAAAAGTTGAAGGTGGGTGACAAGGTGGGTGTGGGGTGCATGGTTCTATCCTGCAGGTCATGTAAAAGCTGTGATGAGAATCTCGAGAACTACTGTCCAAAAATGATTCTGACATACGGAGCGAAGTATGTTGATGGAAGCATCACACAAGGAGGCTATTCTGATCTGGTGGTTGTAGATGAACATTTTGTGATCAGCATTCCTGATGATCTACCTCTTGAGGCTGCTGCACCTCTCTTATGTGCTGGGATCACAGTGTATAGCCCTCTCATATATTTTGGACTTGACAAGCCAGATACGCATGTGGGTGTGGTTGGTCTTGGTGGGGTTGGTCACATGGCTGTCAAGTTTGCCAAAGCTTTTGGCGCTAAGGTCACTGTAATCAGCACATCTCCAAACAAAAGGAAAGAAGCCATTGAGCATCTTGGAGCTGACTCATTTGTGGTCAGTCGTGAGGAAGATCAGATGCAGGCTATAAAGGGTACCTTGGATGGTATAATAGACACAGTTTCTGCAGTCCATCCTCTGCTCCCTCTGTTGGATTTGTTGAAGAGTCATGCGAAACTTGTCATAGTTGGTGTACCTGATAAGCCTTTAGAGTTACCCATCTTTCCTTTACTAGCCAGAAAGGGTGTAACTGGCAGTAGCATTGGAGGAATAAAGGAGACACAAGAAATGATTGATTTTGCTGTCAAACACGATATAAAGCCTGATATTGAGATTATTCCTATTGATTATGTGAACAAAGCAATGGAGCGTCTCGTCAAAGCAGATACGAGGGTGAAGTTATTGCTTGTTTCTGTTCTTAATTTGATGAAGTTGGCATTTGTCGTTGATTAA 1095 0.4447 MAITPGLEHTRKAIGWAARDTSGVLSPFNFTRRETGEKDVAIKVLYCGICHTDLHNAKSEWGQSFYPLVPGHEIAGEVIEVGSKVEKLKVGDKVGVGCMVLSCRSCKSCDENLENYCPKMILTYGAKYVDGSITQGGYSDLVVVDEHFVISIPDDLPLEAAAPLLCAGITVYSPLIYFGLDKPDTHVGVVGLGGVGHMAVKFAKAFGAKVTVISTSPNKRKEAIEHLGADSFVVSREEDQMQAIKGTLDGIIDTVSAVHPLLPLLDLLKSHAKLVIVGVPDKPLELPIFPLLARKGVTGSSIGGIKETQEMIDFAVKHDIKPDIEIIPIDYVNKAMERLVKADTRVKLLLVSVLNLMKLAFVVD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02072 364 FunFam Cinnamyl alcohol dehydrogenase 167 322 - -
Vimu11g02072 364 Gene3D - 16 349 - -
Vimu11g02072 364 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Vimu11g02072 364 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Vimu11g02072 364 FunFam Uncharacterized protein 16 166 - -
Vimu11g02072 364 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vimu11g02072 364 Gene3D - 167 322 - -
Vimu11g02072 364 CDD CAD1 15 345 IPR047109 GO:0016616
Vimu11g02072 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vimu11g02072 364 PANTHER ALDEHYDE REDUCTASE 8 349 IPR047109 GO:0016616
Vimu11g02072 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Vimu11g02072 364 SUPERFAMILY GroES-like 20 184 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02072 Vimu-Chr11 34190994 34192937 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02072 11 358 Monolignol Biosynthesis Gene Families AT4G37990 67.908 1.05e-153 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02072 K23232 - gmx:100809071 510.76