Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02068 GACATTCAGATGGCTGCAACACCAGGACTTGAGCATTCTAGGAAGGCTTTTGGATGGGCCGCTAGAGACAAATCTGGGGTTCTCTCCCCCTTCGACTTCACAAGAAGGGAAACAGGAGAGAAAGATGTGGCAATCAAAGTGTTATACTGTGGTATATGCCACACTGATCTTCACGTTATTAAGAGTGAATGGGGTCAGTCCTCTTATCCACTGATACCCGGGCACGAGATTGCCGGTGAAGTGATAGAGGTTGGAAGCAAGGTACAGAAGTACAAGGTGGGAGATAGGGTGGGTGTGGGGTGCATGGTTAATTCCTGTAGGTCGTGTAAAAGCTGCGATGAGGATCTTGAGAATTACTGTTCAAAAACGATTCAGACATATGGAGCGAAGGATATTGATGGGAGCTTCACACAAGGAGGCTACTCTGATCTGGTGGTTGTAGATGAACACTTTGTGATCAGCATTCCTGATAACCTACCTCTTGAGGCTGCTGGTCCTCTCTTATGTGCTGGGATTACAGTTTATAGCCCTCTCCGATATTTTGGAATTGACAAACCAGGCCTGCATTTGGGTGTGGTTGGTCTTGGTGGCCTTGGTCATATGGCTGTTAAGTTTGCCAAAGCTTTTGGGGCTAAGGTCACTGTAATCAGCACATCTCCAAACAAAAAGAAGGAAGCTATTGAGCATCTTGGAGCTGATTCATTTTTGGTCAGTCGTAATCAAGAGGAGTTGGAGGCTGCAAAGGGCACCTTGGATGGTATAATAGATACAGTGTCTGCAGTTCACTCTCTGGTCCCTCTTGTTGATTTGTTGAAGACTGGTGGGAAACATGTCATTGTTGGTCTACCTGATAAGCCTTTGGAGTTACCCATCTTTCCTTTACTTGCGAGAAAGAGTGTAGCTGCCAGTAACATTGGAGGAATAAAGGAGACTCAAGAGATGATTAATTATTGTGCTAAACACGATATACAGCCTGACATTGAGATTATTCCTGTTGATTATGTAAACACGGCAATGCAGCGTCTCGTCAAAGCAGATGTCAAATATCGATTTGTTATTGACATTGGCAACACACTGAAGCGCAGTTCTTAA 1092 0.4478 DIQMAATPGLEHSRKAFGWAARDKSGVLSPFDFTRRETGEKDVAIKVLYCGICHTDLHVIKSEWGQSSYPLIPGHEIAGEVIEVGSKVQKYKVGDRVGVGCMVNSCRSCKSCDEDLENYCSKTIQTYGAKDIDGSFTQGGYSDLVVVDEHFVISIPDNLPLEAAGPLLCAGITVYSPLRYFGIDKPGLHLGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKKEAIEHLGADSFLVSRNQEELEAAKGTLDGIIDTVSAVHSLVPLVDLLKTGGKHVIVGLPDKPLELPIFPLLARKSVAASNIGGIKETQEMINYCAKHDIQPDIEIIPVDYVNTAMQRLVKADVKYRFVIDIGNTLKRSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02068 363 PANTHER ALDEHYDE REDUCTASE 11 358 IPR047109 GO:0016616
Vimu11g02068 363 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Vimu11g02068 363 FunFam Cinnamyl alcohol dehydrogenase 170 325 - -
Vimu11g02068 363 SMART PKS_ER_names_mod 26 353 IPR020843 GO:0016491
Vimu11g02068 363 SUPERFAMILY GroES-like 22 187 IPR011032 -
Vimu11g02068 363 Gene3D - 170 325 - -
Vimu11g02068 363 CDD CAD1 17 354 IPR047109 GO:0016616
Vimu11g02068 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 323 IPR036291 -
Vimu11g02068 363 FunFam Uncharacterized protein 19 169 - -
Vimu11g02068 363 Pfam Zinc-binding dehydrogenase 197 317 IPR013149 -
Vimu11g02068 363 Pfam Alcohol dehydrogenase GroES-like domain 41 154 IPR013154 -
Vimu11g02068 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Vimu11g02068 363 Gene3D - 19 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02068 Vimu-Chr11 34070610 34072581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02068 13 360 Monolignol Biosynthesis Gene Families AT4G37990 68.195 4.52e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02068 K23232 - gmx:100809071 549.666