Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02067 ATGGTTTTCACAAAGAAAACTGGTTTTCTCCTATTAGGGGGAATAATACACTTCTGCTTCTTACTCATTCGCTGTGCCTCAAGGAGTTTAAGTGAGTTCAAAGGTTCCGACGTAGCATTTAATAATCCTGAAGTCAAATTGCATATAGAAAAGAAGCAGATCACAGTGCAAAATGGCATCATTCGTGCAACTTTCTCAAATCCGGAGGGCACCATCCTTGGAATATCATATAATGGAATAAACAATGTGCTTGAAGGTCGTAATAACTTCAAAAACAGAGGGTATTTTGACATTGTCTGGAATTCACCTGGAGCCCCTTCAAAACTTTGGGGAATTGAAGGGAGTAGGTTTTCAGTTATAGAGGCCAACAAGAATGAAGTAGAACTTTCGTTTTCCAGAACGTGGAACAAGGACAACTCAAGTCCCCCTTTAAACATAGACAAAAGATATATTTTACGAAGAGGTAGTTCAGGATTATACATATATGGTATATTTGAGCATCCTGAAGATTTTCCTGCAACTGAGATTGATCACATTAGGATTGTTTTCAAGCTGCAGAAGGAGAGGTTCCAGTACATGGCTATAGCAGATGATAGGCAGAGACTCATGCCAACAGCAGAAGATAGATCTACAGGGCAACGCCTTGATTATGATGAAGCTGCTCTAATCACCAATCCTAGTAACCCTCAACTTCGAGGAGAGGTTGATGACAAATATCAATACTCTTGTGAGAACAAAGACAACAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACCAATAAGTCAGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGGCAAGGCCTTACTTCTCATGTTGGTCCTGTCACCCTTAATATACTCCATACCACTCACTACTCTGGGAAGGAAGTAACCATGACATTACACGAAGGGGAACCCTTCAAGAAAGTATATGGTCCCGTTTTTGCTTATCTTAACTCAGTTTCAAGGGTTCATCATTCAGAACAAGTCCTCTGGAGTGATGCTGTACAACATCTATCAGAGGAAATCAATAGATGGCCTTATGATTTCCCTAAATCAGAGGATTTTGTCCCTACAAATAAAAGGGGAAGAGTGGAAGGACAATTATTCGTTCAAGACATTAAAGGAGGGAATTTTTTATGTGGCGAAAATGCCCACATTGGTTTGGCACTTCCTGGAGATGTGGGATCATGGCAGAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGATAAACTTGGCCACTTCACTATAGCAAATATTGTACCAGGGGACTACAATTTATATGCATGGATTCCTGGAATTTTTGGAGACTATAAATATAACGCTACCATAACCATAACACCAGGATGTATCGTCCAATTGGGTTCACTCATATACAATCCTCCAAGAAATGGACCAACCTTATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTGATAAACCGATTATACATAGCAAAACCATTGCACAAGTTTAGACAATATGGATTATGGAAGCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACACTGTTGGCGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCCAGGAACATAGGAAACAACTCATTTCATCCAACAGTATGGGAGATTAAATTTGATCTCCCATTTGTTATGAGAGGCATCTACACACTCCGACTTGCCTTGGCCTCAGCTACACGTTCTAACTTGATGGTTAGGTTCAACAACCCTGTGGCTCGTCCTCCACACTTTTCTACGGGATTAATAGGTCAAGATAATGCAATAGCAAGACATGGCATCCATGGATTATATTGGCCTTATAGTATTGAAGTAGGAAGCAATGTATTGGTGGAAGGAAGCAACACCATCTATCTTAGGCAAACAAAAGGTACGAGTCCTTTTCAAGGCATTATGTATGACTACATCCGTTTGGAAAGACCAGAAGCATAA 2019 0.4066 MVFTKKTGFLLLGGIIHFCFLLIRCASRSLSEFKGSDVAFNNPEVKLHIEKKQITVQNGIIRATFSNPEGTILGISYNGINNVLEGRNNFKNRGYFDIVWNSPGAPSKLWGIEGSRFSVIEANKNEVELSFSRTWNKDNSSPPLNIDKRYILRRGSSGLYIYGIFEHPEDFPATEIDHIRIVFKLQKERFQYMAIADDRQRLMPTAEDRSTGQRLDYDEAALITNPSNPQLRGEVDDKYQYSCENKDNKVHGWINLDSKTNKSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGEPFKKVYGPVFAYLNSVSRVHHSEQVLWSDAVQHLSEEINRWPYDFPKSEDFVPTNKRGRVEGQLFVQDIKGGNFLCGENAHIGLALPGDVGSWQRQSKGYQFWTQADKLGHFTIANIVPGDYNLYAWIPGIFGDYKYNATITITPGCIVQLGSLIYNPPRNGPTLWEIGIPDRSAAEFHVPNPYPNLINRLYIAKPLHKFRQYGLWKRYNELYPNEDLTYTVGVSDYSKDWFYAQVPRNIGNNSFHPTVWEIKFDLPFVMRGIYTLRLALASATRSNLMVRFNNPVARPPHFSTGLIGQDNAIARHGIHGLYWPYSIEVGSNVLVEGSNTIYLRQTKGTSPFQGIMYDYIRLERPEA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02067 672 Pfam Polysaccharide lyase family 4, domain III 479 667 IPR029411 -
Vimu11g02067 672 Pfam Polysaccharide lyase family 4, domain II 394 463 IPR029413 -
Vimu11g02067 672 CDD RGL4_M 371 469 IPR029413 -
Vimu11g02067 672 Pfam Rhamnogalacturonate lyase family 42 235 IPR010325 -
Vimu11g02067 672 SUPERFAMILY Galactose mutarotase-like 57 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu11g02067 672 Gene3D - 367 465 - -
Vimu11g02067 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 50 671 - -
Vimu11g02067 672 CDD RGL4_C 481 668 - -
Vimu11g02067 672 SUPERFAMILY Galactose-binding domain-like 476 668 IPR008979 -
Vimu11g02067 672 Gene3D - 46 326 IPR014718 GO:0030246
Vimu11g02067 672 SUPERFAMILY Starch-binding domain-like 368 466 IPR013784 GO:0030246
Vimu11g02067 672 Gene3D - 477 668 - -
Vimu11g02067 672 CDD RGL4_N 45 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02067 Vimu-Chr11 33953727 33957496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02067 45 670 Polysaccharide Lyase AT1G09910 52.848 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02067 K18195 - gmx:100792575 1078.16