Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02065 ATGGCTTTCTTCTCCTCTTCTTCATGCTCTAATCAAACCCAGAAACAAACATATTTCTTCATATGTATCATCTACTTCTTCACTTTGTTCCATAACACTGTAGATTCAGTTTCCTTCAACTTTTCCAGCTTCCAGCAGTCAAACTTAAACAACCAAATAAACTTCACGGGTGATGCTTTTCCCTCAAACGGTGTTCTTCAGCTCACGAAGAACCAACTCGATGGCCCCATCACAGATAGCGTTGGTCGAGCCTCGTATGAACAACCAGTGAGGATTTGGGATAAAAAAACAAAGAAGCTCACCGATTTCACAACCCACTTCTCTTTCGTCATGAGAGCTGTGGACCAGTCATTTGTTGGTGATGGCTTAGCCTTCTTCCTTGCACCCTTTGATTCTTCCATTCCCAACAATTCCTCTGGTGGGTTCCTTGGCCTGTTCAGCCCGGATTCCGCATTCGACACGAAGAAAAATCAGATGGTGGCAGTTGAGTTCGACAGTTTCAAGAATGAATGGGATCCGAGCTCAGACCACGTAGGGATCAATGTAAATTCCATTCAATCAGTTGCAAACGTCACTTGGAAGAGCAACATAAAGAACGGGTCTGTTGCTAATGCTTGGGTATGGTACAACTCCACATCCAAAACTCTATCTGTCTTCCTTAGCTATGCTGAAAATCCAACCTTCAATGGCAGTTCCAGTCTTTCTTACGTTATTGATTTGAGGGACGTGTTGCCAGAGTTTGTCAGAATAGGATTTTCTGCAGCAACGGGAACATGGGTTGAGATACACAACATTTTGCTTTGGTCATTCAGTTCAACCTTGGATGAACCTGGTAGGAAAAAGGTCAAGGTTGGCTTAGTGGTTGGTGTAAGTGTTGGTTTGGGTTGTTTAGCTTGTGCTGCTGGTCTAGTATGGTTTACCTTTTGGAGAAGGAGAAATAGACTAAGGGGTGTAAACGATGATGAAATTGGTGTTGATGCCATAGATGATGAGTTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTACCGGGAACTAAGCAACGCAACCAACAACTTCGCTGAAGAAGGGAAGCTAGGACAAGGAGGGTTTGGAGGAGTTTACAAAGGTTTGATTGTGAATTCAAACCTTGAAGTGGCAGTGAAGAGGGTTTCGAAAGGGTCAAAGCAAGGGAAAAAGGAGTACATATCAGAAGTGACAGTAATCAGCCGTCTGAGACACAGAAACCTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTCCTTCTTGTATATGAATTCATGCCAAACGGAAGCCTTGATTCACATCTATTTGGAAATAGAGTAATGCTTTCGTGGATGGTGAGATACAAGGTGGCAATAGGTTTGGCATCTGCACTCCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTCCATAGAGATATAAAGTCAAGCAACGTAATGTTGGATGGTAATTTCAATGCAAAGCTTGGTGACTTTGGCCTTGCAAGGATGGTAGACCACGAACTAGGTTCACAAACGACTGTTTTGGCCGGCACCATGGGGTATCTAGCGCCAGAGTGTGTGACGACAGGGAAATCAAGCAAGGAATCTGATGTGTACAGCTTTGGTGTTGTGGCACTTGAGATCACATGTGGTAGAAAACCAGTGGAGGTGAAAGAAGAGGCTGGTAAAGTTAGGCTAGTGGAGTGGGTGTGGAACCTCTACGGAAAAGGGAAAGTACTAGAAACAGCTGATGAGAAACTGAATCGGGAATTTGAAGAACAGCAAATGGAATGTTTGATGGTTGTGGGGTTGTGGTGCTGTCACCCTGATCATACCATGAGGCCCTCCATTAGGCAAGTGATAAGTGTGCTTAACTTTGAAGCCCCTTTGCCAAGTCTTCCATCGAAGTTGCCAGTGCCAATGTACTTTGCACCTCCCATGGAGATTTCCCAGTTCTCCTACTCTTCATCTTCCGTCACAAACACAACCAAAGATTCCTCCCCGTACTCCTCAATTTCTACTGGCTCCCGAAAGTCTCCCTTGTACCAATAA 2046 0.4462 MAFFSSSSCSNQTQKQTYFFICIIYFFTLFHNTVDSVSFNFSSFQQSNLNNQINFTGDAFPSNGVLQLTKNQLDGPITDSVGRASYEQPVRIWDKKTKKLTDFTTHFSFVMRAVDQSFVGDGLAFFLAPFDSSIPNNSSGGFLGLFSPDSAFDTKKNQMVAVEFDSFKNEWDPSSDHVGINVNSIQSVANVTWKSNIKNGSVANAWVWYNSTSKTLSVFLSYAENPTFNGSSSLSYVIDLRDVLPEFVRIGFSAATGTWVEIHNILLWSFSSTLDEPGRKKVKVGLVVGVSVGLGCLACAAGLVWFTFWRRRNRLRGVNDDEIGVDAIDDEFERGTGPKRFTYRELSNATNNFAEEGKLGQGGFGGVYKGLIVNSNLEVAVKRVSKGSKQGKKEYISEVTVISRLRHRNLVQLIGWCHEQGELLLVYEFMPNGSLDSHLFGNRVMLSWMVRYKVAIGLASALLYLHEEWEQCVVHRDIKSSNVMLDGNFNAKLGDFGLARMVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRKPVEVKEEAGKVRLVEWVWNLYGKGKVLETADEKLNREFEEQQMECLMVVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYFAPPMEISQFSYSSSSVTNTTKDSSPYSSISTGSRKSPLYQ 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02065 681 PANTHER - 54 632 - -
Vimu11g02065 681 SMART serkin_6 353 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02065 681 MobiDBLite consensus disorder prediction 655 681 - -
Vimu11g02065 681 Gene3D Phosphorylase Kinase; domain 1 338 429 - -
Vimu11g02065 681 FunFam L-type lectin-domain containing receptor kinase IX.1 338 429 - -
Vimu11g02065 681 CDD STKc_IRAK 367 623 - -
Vimu11g02065 681 ProSitePatterns Legume lectins alpha-chain signature. 244 253 IPR000985 -
Vimu11g02065 681 SUPERFAMILY Protein kinase-like (PK-like) 337 656 IPR011009 -
Vimu11g02065 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Vimu11g02065 681 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02065 681 Pfam Protein kinase domain 354 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02065 681 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524
Vimu11g02065 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 277 IPR013320 -
Vimu11g02065 681 Gene3D - 34 286 - -
Vimu11g02065 681 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Vimu11g02065 681 Gene3D Transferase(Phosphotransferase) domain 1 430 643 - -
Vimu11g02065 681 CDD lectin_legume_LecRK_Arcelin_ConA 37 274 IPR001220 GO:0030246
Vimu11g02065 681 FunFam L-type lectin-domain containing receptor kinase IX.1 35 283 - -
Vimu11g02065 681 Pfam Legume lectin domain 37 277 IPR001220 GO:0030246
Vimu11g02065 681 FunFam Lectin-domain containing receptor kinase A4.3 430 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02065 Vimu-Chr11 33898413 33900746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02065 23 640 Receptor kinase-like Gene Family AT5G10530 51.020 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g02065 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02065 - - pvu:PHAVU_003G287100g 1203.73