Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02043 ATGGAGCTTTCTCAGCTTGGTTTCTTAGAAGAATTGGTAGCTCCAAGAAGAGAGACATGGAATGCTTTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTCCCCGTCTCTAACACCCTCTTTGGTGCATTTTCAGCACCAATAGACCGCAGATTTGAATGCCCTTTCACCAATGAAGTACCACCATACCCATTTCCTGATGCCTTCACAATGTCATTACCAGAGCTTGAACCTGGGAACGATGATCCCTCACCTCCACTTCCACCCACACTCGAGGATGAAGATATTAGCTTTTATCACAACAACAATAACAACTTTCAAGATATCAAGAGTGTCTGCAAAGTTGAGGAACATGGTGTTGAGAATCCACAAGCCACAGAGATTCCACTCTTCAACACAGCCATGTCTGATGATGTAGAGAGAAAACACAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAAATCAGCAAGATGGACAGGACCTCTATTCTCGGGGATACTATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCAAGAACAAGAGGTGGAAGAGGGCTCAAGGCAGATTAATCTGTTGGGCATTTCAAAGGACCAACTCAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGGCCAGGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACGTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCGGTGGAAGCATCTTGTTCTGAGGTTGGTGAACAGAGAAATAGCATTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCTGGGTTTGGTGGGAAATGTCTCTAG 1011 0.4392 MELSQLGFLEELVAPRRETWNALSSGFLELLSNGWSFDTFLENPSFPVSNTLFGAFSAPIDRRFECPFTNEVPPYPFPDAFTMSLPELEPGNDDPSPPLPPTLEDEDISFYHNNNNNFQDIKSVCKVEEHGVENPQATEIPLFNTAMSDDVERKHKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEQEVEEGSRQINLLGISKDQLKPNEAIVRNSPKFDVERRGQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVGEQRNSISPEEIKQSLFRNAGFGGKCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02043 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 117 331 - -
Vimu11g02043 336 SMART finulus 168 217 IPR011598 GO:0046983
Vimu11g02043 336 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Vimu11g02043 336 Gene3D - 148 212 IPR036638 GO:0046983
Vimu11g02043 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Vimu11g02043 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02043 Vimu-Chr11 33403868 33405225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02043 150 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.775 1.30e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02043 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02043 - - gmx:100790319 454.521