Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02018 ATGACAGAGTACCGGTCACCGCCGACGATGAATCTCTGGACCGACGACAACACTTCCGTCATGGAGGCCTTCATGAGCTCATCCGACTTCTCATCCCTGTGGCTTCCCACGCCTCAATCCGCTGCCTCTAGTACCACTCCGGGAGCCGACGCTTCTAGAGCCCCGCCGCCACCTCCGCCGTCCCAGTCTCAGTCCCTTCTTAACCAGGAGACCTTACAACAACGGCTGCAAACGCTGATCGAAGGTGCCAGAGAGAGCTGGACCTATGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCGGCGCTTCCCTTCTCGGTTGGGGCGACGGATACTACAAGGGCGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAGGAGACGTCGTCCGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATCTCCGGCCCTTCCGCTTCTGCCGATGACGTCGACGAAGAGGTATCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAATGGCAGCGGCCTCCCGGGCCAGGCTTTTTTTAATTCCAGTCCCGTTTGGGTCGCCGGGCCCGACCGGTTATCCGAATCGGCGTGCGAGAGGGCCCGCCAGGCGCAGGTTTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCGTCTACGGAGGTGATTTTCCAGAACCCTGATCTCATGAACAAAGTACGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGTTCCTGGCAGTTGAATTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAATCCTTCCTCCTCTATAGAAATCAAGGACACCTCTAACGCCGTTGCACCGGCTTCAGCAAATGCAACAGTGAGCAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTTACAGAAACCCCTAGTGCCGCCGCCGCAGCAGCTCACGTCCCCAACCCCAAGAACCAGGGTTTCTTCCCGAGGGAGTTGAACTTCTCCAACTCCTTAAAGCCCGAATCCGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCGCTGTAGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATTCTGTCCTTCACCTCCGGCGTCATTCTACCGGCTTCGAATGTAAAATCCGGGGGTGGTGGTGGTGCCGGGGGCGGTGATTCTGAAAACTCGGATCTGGAGGCTTCCGTTGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGTAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCAGTGGTTCCAAACGTGTCGAAGATGGACAAGGCTTCGCTCTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAGCTTGAGCTGTCAACTAAAAACCCTTCTCCTCCTTCTCCTCCACGGGGACCATCTCCATCTAACAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAAGTAGAGGTGAAGATCATAGGGTGGGACGCAATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCAAGGTTGATGGCAGCGTTGAAGGACCTGGACCTGGACGTGCATCACGCCAGCGTCTCAGTGGTCAATGATTTGATGATCCAACAGGCCACCGTCAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTATCCTCCAAAATTGGCCACGCACTATAG 1950 0.5523 MTEYRSPPTMNLWTDDNTSVMEAFMSSSDFSSLWLPTPQSAASSTTPGADASRAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKETSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPDRLSESACERARQAQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFSNPDAGSWQLNCVATDQGENDPSSLWLNPSSSIEIKDTSNAVAPASANATVSKTMPFETPGSSTLTETPSAAAAAAHVPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSSIDDGILSFTSGVILPASNVKSGGGGGAGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSAKKELELSTKNPSPPSPPRGPSPSNKEAKETTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGHAL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02018 649 MobiDBLite consensus disorder prediction 35 50 - -
Vimu11g02018 649 Coils Coil 501 542 - -
Vimu11g02018 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Vimu11g02018 649 SMART finulus 468 517 IPR011598 GO:0046983
Vimu11g02018 649 MobiDBLite consensus disorder prediction 431 472 - -
Vimu11g02018 649 Pfam Helix-loop-helix DNA-binding domain 466 511 IPR011598 GO:0046983
Vimu11g02018 649 MobiDBLite consensus disorder prediction 517 537 - -
Vimu11g02018 649 Gene3D - 454 541 IPR036638 GO:0046983
Vimu11g02018 649 FunFam Transcription factor bHLH13 455 529 - -
Vimu11g02018 649 CDD bHLH_AtAIB_like 459 535 - -
Vimu11g02018 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Vimu11g02018 649 MobiDBLite consensus disorder prediction 35 66 - -
Vimu11g02018 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Vimu11g02018 649 PANTHER MYC 22 644 IPR045084 GO:0003700|GO:0006355
Vimu11g02018 649 MobiDBLite consensus disorder prediction 517 563 - -
Vimu11g02018 649 MobiDBLite consensus disorder prediction 411 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02018 Vimu-Chr11 32553001 32556716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02018 1 646 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.483 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02018 bHLH-MYC_N 1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02018 K13422 - gmx:100790854 968.763