Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01999 CTATGCTGCCATGTTTTCCACCAGGACTGCATCGACCTCTGGCTCTGCTCTCACAAAACCTGCCCCGTTTGTCGCCGAGACCTTGACTCTCCCCCAGACGACCAACCTCTCAAACCTGGAGACGTCGTTGTTTCCTCAGCTAGCGGTGAGATACGCGTTGATGTGAGAGAAGAAGAAGGCCTTGATTGTGGTCGTGAACATGTTTGTGATAACAGTCAAGATCAACAACATCATGAACAACAGGAGGAACAAACTGAATCTGAACGTAGTCGTGGTCTAGGACAGGAACATGAGGTGGTTGATGCACATGAGGAACAAATGTTTGTACGGTCTCATTCCACCGGACACTCCATAGTTATGATTAGAGGGGAGGGGGATGATGAGGGAAAGAATGACGATGACAAGTACACGTTGAGATTGCCGGAGCATGTTTTGAGAGTGAACAGTAAACATAATTCTACGAGGAGCTGTGCGAGTTTTAAGGATATGACTAAGCTTGATGCT 504 0.4762 LCCHVFHQDCIDLWLCSHKTCPVCRRDLDSPPDDQPLKPGDVVVSSASGEIRVDVREEEGLDCGREHVCDNSQDQQHHEQQEEQTESERSRGLGQEHEVVDAHEEQMFVRSHSTGHSIVMIRGEGDDEGKNDDDKYTLRLPEHVLRVNSKHNSTRSCASFKDMTKLDA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01999 168 ProSiteProfiles Zinc finger RING-type profile. 2 25 IPR001841 -
Vimu11g01999 168 MobiDBLite consensus disorder prediction 64 96 - -
Vimu11g01999 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Vimu11g01999 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 107 - -
Vimu11g01999 168 MobiDBLite consensus disorder prediction 29 51 - -
Vimu11g01999 168 SUPERFAMILY RING/U-box 2 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01999 Vimu-Chr11 31817262 31817768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01999 2 154 Rapid Response to Elicitors AT2G35000 31.481 1.02e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01999 - - vum:124822565 312.768