Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01998 ATGGATTACGCTCGAGACGGGAACGTGGTTCAAATAATCACTGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCCGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCATAGCATTGAGGAGCTACGCCGCCCGCCACCAAATTGGCAGGAGATAGTGGCAGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGAGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGTGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCAGGGGGTTATGCTGGCGGTGGTGGTGGAAGCAGTGGCGGTGGTAGTGGCGGGGGAGGTGGAAGTGGAAATGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGGGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGCTTCTGTGGTTGGCTGTGACACGAATAAGGGAGCAGCTTCGAAAGCTTCTGCCGATAACGTTGTTGCTGCGGTTACTCCTGTTGCCCATTCCGATGTGTACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGACCAGGGCAGAGAACTCATCAGAAATGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATAG 1107 0.5131 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRYWNNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGSSGGGSGGGGGSGNGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGASVVGCDTNKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01998 368 Gene3D - 82 118 - -
Vimu11g01998 368 Gene3D - 241 279 - -
Vimu11g01998 368 FunFam zinc finger CCCH domain-containing protein 15-like 241 280 - -
Vimu11g01998 368 Gene3D - 155 202 - -
Vimu11g01998 368 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Vimu11g01998 368 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Vimu11g01998 368 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Vimu11g01998 368 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Vimu11g01998 368 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Vimu11g01998 368 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Vimu11g01998 368 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Vimu11g01998 368 MobiDBLite consensus disorder prediction 1 80 - -
Vimu11g01998 368 FunFam Zinc finger, CCCH-type 156 194 - -
Vimu11g01998 368 SUPERFAMILY CCCH zinc finger 245 278 IPR036855 GO:0046872
Vimu11g01998 368 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Vimu11g01998 368 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Vimu11g01998 368 MobiDBLite consensus disorder prediction 36 62 - -
Vimu11g01998 368 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Vimu11g01998 368 PANTHER CCCH ZINC FINGER/TIS11-RELATED 229 279 IPR045877 GO:0003729
Vimu11g01998 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 273 IPR000571 GO:0046872
Vimu11g01998 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01998 Vimu-Chr11 31811587 31814642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01998 249 277 C3H Transcription Factor Family AT1G68200 62.069 3.72e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g01998 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01998 - - gmx:102665148 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01998 11 31811587 31814642 Vimu11g01998 11 31811587 31814642 ECH