Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01994 CTTGTACCTGTTATTTGCTTCTACTTTTTTGTCTTAGAACATTTGTTGTGTCCCTGCCTAATGGGTAGGTCACCTAGCAGTAACGAGAGTAATGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGAGGAACGTGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGCTGCAGGTTGAGGTGGGAAAATTATCTAAGACCAGATATTAAGAGAGGAAAATTAACTGAAGAGGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCTACAAGTCTTCCAGGGAGAACTGATAACGAGATCAAGAATTATTGGAACACCACCATAAGAAAAAAGCTTCTCCACATGGGTATTGATCCTGAAACTCACAGGCCAAGAACTGACTTGAATCATCTGATGAATCTTTCCCAGTTGCTTGGCATGTCAGATTTGGGCACATCAATGAGTCCTTGGACCAACCCTACCAGTTTACAAACAGATGTCACTCAATTAGCCAAACTACAAGTGCTACAAAATATGTTACAACTTATGAACAACACTTCATTGATTAGCATGACTAATCCTTACCTCTTAGACAATCAAATTCTCAACCCACCATCACTTGATACATTCCTCCATGGAACAAACACCCTCAAAGTGAAAGATCCAATGATCAGAGGTCCAGAATATCCAAACCCTATTGGTTACAACATATCCGATCCATTCTCTCAAACACCCAGTGACTATTCTCAGCAGAACATCTTCAAATCAGGGATAGAAAAAGAAAATGAAACTAATCATCAAGAAGTTCGTAGTTATACCAAAAACATTAACACTTCACAACAAAATCAAGAAGAAAATTTACTTCCACCGTTAGTTACTTCGTGTCCAAGGACAACCTCCTTCAACAAAATGGAGAGCAACTATAATGAAGCACAAAAGTCCACAGAGTTACCTTTCTCTACAACTTTTCAGGCTTGGGAGAAGTTTCTCATTGAAGATGATGAAGCAAGCGGTTCCTACTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCATCTCCAGTTTCCTGA 1122 0.3948 LVPVICFYFFVLEHLLCPCLMGRSPSSNESNVKKGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLRPDIKRGKLTEEEEQLIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLHMGIDPETHRPRTDLNHLMNLSQLLGMSDLGTSMSPWTNPTSLQTDVTQLAKLQVLQNMLQLMNNTSLISMTNPYLLDNQILNPPSLDTFLHGTNTLKVKDPMIRGPEYPNPIGYNISDPFSQTPSDYSQQNIFKSGIEKENETNHQEVRSYTKNINTSQQNQEENLLPPLVTSCPRTTSFNKMESNYNEAQKSTELPFSTTFQAWEKFLIEDDEASGSYWKEILDLTSTSASPVS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01994 373 SUPERFAMILY Homeodomain-like 31 128 IPR009057 -
Vimu11g01994 373 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Vimu11g01994 373 CDD SANT 36 81 IPR001005 -
Vimu11g01994 373 CDD SANT 91 132 IPR001005 -
Vimu11g01994 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Vimu11g01994 373 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Vimu11g01994 373 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Vimu11g01994 373 PANTHER F14D16.11-RELATED 21 352 - -
Vimu11g01994 373 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vimu11g01994 373 SMART sant 33 83 IPR001005 -
Vimu11g01994 373 SMART sant 86 134 IPR001005 -
Vimu11g01994 373 Gene3D - 90 136 - -
Vimu11g01994 373 FunFam MYB-related transcription factor 33 86 - -
Vimu11g01994 373 FunFam Transcription factor MYB39 89 150 - -
Vimu11g01994 373 Gene3D - 26 87 - -
Vimu11g01994 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01994 Vimu-Chr11 31718662 31720323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01994 21 372 MYB Transcription Factor Family AT3G02940 43.889 1.95e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g01994 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01994 K09422 - gmx:100803906 513.842