Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01993 ATGAAATCTAGAAATGTTGTATCTAATTTTGCAGGAAATGCTAGAGGCAAAAAAAAACGAGAAGCAAGGCAACAACTCCTACATGCTATGAATGCAGCAAAGAAGGCCATATCAAGCCTGAGTAAGGAGGAACAAGTAAAAACGACCTATATTGCCAGGGAGGATTGTGATTTTGGCTACTCATCAAGTAATGATGATGATGATGATGATGATCAAAGTCTAGAAGAAGAGACAAATCTGTGTCTCATGGCTGGCTTGGGCAATATCAACATGTCAGATGGAGAGAAGAAAGAAAAGGGGACGCAGGAACGAAAGGTTCCTCTTCTGAAGCTCTTCTCCTTCGCTGACTTGTACGACTGCGTTTTAATGGGTGTCGGATCTGTTGGGGCGTGTGTTCATGGTGCCTCTGTGCCTGTTTTCTTTGTCTTCTTCGGAAAGATTATCAACGTAATAGGTTTGGCTTACCTTTTTCCCAAAGAAGCTTCCCACGAAGTTGCCAAGGTGGCATGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGGCTTCAACTGGAGAGGTTATTTCTTCTATTACCACTGACATCATCGTTGTTCAAGATGCACTTTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGTTTTATCGCAGGCTTTACTATTGGTTTTGTGAGAGTGTGGCAAATAAGTTTAGTGACACTTGCCATTGTGCCATTAATTGCTATTGCTGGTGGCCTTTATGCTTACGTCACCATTGGCCTTATCGGAAAAGTTCGAAAAGCATATGTGCGAGCTGGTGAAATTGCTGAGGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCAGGGGAAGAAAGAGCAGTGAGATCGTACAAAGCAGCTCTGATGAACACATATAAACATGGTCGAAAAGCAGGTTTAGCTAAGGGTCTGGGATTAGGCTCCATGCATTGTGTTCTTTTCCTTTCATGGGCTCTCCTTGTTTGGTTCAATAGCATAGTTGTTCACAAGAATATCGCCAATGGTGGCGATGCTTTCACTACAATGCTCAATGTAGTAATTTCTGGCCTGTCACTTGGTCAGGCAGCACCAGATATTTCTGCATTTATCAGGGCAAAGGCATCAGCATATCCCATTTTTGAGATGATAGAGAGGGACACCATGAACAAAGTCAGCTTAGGAAATGGTCAAAAGTTAAGAAAATTGGAAGGTCACATCCAATTTAAGGATGTCTGTTTTAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAACTTTTGTCTTGAGATTCCTCCAGGGAAAATTTTAGCTCTTGTGGGAGGAAGTGGTTCCGGAAAAAGCACAGTTATCTCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTGAAATACTATTAGATGGGAACACCATCAGGGAACTTGATCTCAAATGGCTTAGACAACAGATTGGTCTGGTCAATCAAGAGCCTGCACTTTTTGCTACAAGCATCAGGGAGAACATACTGTACGGAAAAGATGATGCCACTCTTGAAGAAATAAATCAAGCTGTGATGCTCTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAAGTTGGTGAGAGAGGGATACAATTATCCGGGGGACAGAAACAAAGGATTGCAATATCTCGTGCCATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAAAGTGTACAAGAGGCACTTGATCGTGTCATGGTTGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGTTGTTATTGAGGAAGGGAAGGTGGTGGAAATTGGCAATCACGAAGAACTCATTTCCAACCCAAATAATGTATATGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTCAAGGCCACCTTTCTGTGGATCCTTACTTGGGAGGGTCATCAAGGCGCCTAGGAGAGTCGTCATCCCGCACAACAAGCTTTCGTGGCAGTTTTCGCTCAGACAAAGAATCTACTAGCCGGGCTTTCGGTGATGGAGTAGAAAGTGTTGGAAGTTCAAGGCATGTCTCAGTTAAAAGACTATATTCCATGATTGGTCCTGATTGGCCGTATGGTGTTTTTGGAACCTTTGGTGCATTTATTGCTGGAGCACAAATGCCACTCTTTGCTCTTGGAATCTCTCATGCTCTTATATCTTATTACATGGATTGGGACACAACACGTCATGAAGTGAAAAAAATTGCATTTCTCTTCTGTGGGGCAGCAGTTTTGACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGTGCAAGAGAAAAAATGTTTTCCGGTAATTGTGATATTCTGATTGAGTTTATGACTCGCCCTTCCATTTTTGTTCTTACCGATGCAACATTTTTAAGAACTATAATTGTTGATCGTTCGACAATTCTTCTGCAAAATGTTGGTCTGGTTGTTGCTGCATTTATTATTGCCTTCATGTTGAACTGGAGGATCACGCTTGTTGTACTAGCCACGTACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCAAAGCGTTCATTCAATAGAGGTCAAATTGCTGGCATATTCTATGGCATTTCCCAGTATGGATCTGTGTTGATGGAGAAAGAGCTTTCTAGCTTCAAATCAATTATGAAGTCGTTCATGGTTTTGATTGTAACAGCACTAGCTATGGGGGAGACTTTAGCACTGGCACCTGATATTTTGAAAGGAAATCAAATGGTTGCATCCATCTTCGAAGTGATGGATAGAAAGACAGGAATATTAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAAGGAACAATTGAGTTAAAAAGAATCCGTTTCAACTATCCTTCAAGGCCAGACGTGGTTATTTTCAATGATTTCAATCTCATAGTGCCTGCAGGAAAAAATATTGCCCTTGTAGGGCATAGTGGATGCGGTAAAAGTTCAGTAATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGGAAGGTGATGATTGATAGAAAAGACATCAAGAAACTCAACTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCTGCTCTTTTTGCAACATCAATATATGAAAACATTCTTTATGGAAAGGAAGGAGCTTCAGAAGCTGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAACTGTCTGGTGGCCAGAAGCAAAGGGTAGCTATTGCAAGGGCTGTTTTGAAAAACCCTGAAATTTTGCTGCTTGATGAAGCCACCAGTGCACTGGATTTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTGGACAAATTGATGCAGAACAGAACAACAGTTATAGTAGCACATAGGCTATCCACAATAAAAAATGCAGACCAAATAGCAGTTTTAGAGGATGGAAAGATAATTCAGCGAGGGATTCATGCAAGACTTGTAGAAATCACAGATGGAGCATACTACAAATTAGTCAGCCTTCAACAACAAGAACAGCATGTACAAGAACATTTTGATTGA 3879 0.4179 MKSRNVVSNFAGNARGKKKREARQQLLHAMNAAKKAISSLSKEEQVKTTYIAREDCDFGYSSSNDDDDDDDQSLEEETNLCLMAGLGNINMSDGEKKEKGTQERKVPLLKLFSFADLYDCVLMGVGSVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEVAKVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITTDIIVVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLAIVPLIAIAGGLYAYVTIGLIGKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMNTYKHGRKAGLAKGLGLGSMHCVLFLSWALLVWFNSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKASAYPIFEMIERDTMNKVSLGNGQKLRKLEGHIQFKDVCFSYPSRPDVVIFNNFCLEIPPGKILALVGGSGSGKSTVISLIERFYEPLSGEILLDGNTIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEINQAVMLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVIEEGKVVEIGNHEELISNPNNVYASLVQIQETAFSQGHLSVDPYLGGSSRRLGESSSRTTSFRGSFRSDKESTSRAFGDGVESVGSSRHVSVKRLYSMIGPDWPYGVFGTFGAFIAGAQMPLFALGISHALISYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSGNCDILIEFMTRPSIFVLTDATFLRTIIVDRSTILLQNVGLVVAAFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDILKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIRFNYPSRPDVVIFNDFNLIVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMIDRKDIKKLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIKNADQIAVLEDGKIIQRGIHARLVEITDGAYYKLVSLQQQEQHVQEHFD 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01993 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 170 393 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g01993 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g01993 1292 MobiDBLite consensus disorder prediction 685 708 - -
Vimu11g01993 1292 SUPERFAMILY ABC transporter transmembrane region 729 1024 IPR036640 GO:0005524|GO:0016020
Vimu11g01993 1292 Gene3D ABC transporter type 1, transmembrane domain 166 1012 IPR036640 GO:0005524|GO:0016020
Vimu11g01993 1292 Coils Coil 23 43 - -
Vimu11g01993 1292 CDD ABC_6TM_Pgp_ABCB1_D1_like 123 401 - -
Vimu11g01993 1292 Gene3D ABC transporter type 1, transmembrane domain 101 164 IPR036640 GO:0005524|GO:0016020
Vimu11g01993 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 428 664 IPR003439 GO:0005524
Vimu11g01993 1292 CDD ABC_MTABC3_MDL1_MDL2 428 666 - -
Vimu11g01993 1292 FunFam ABC transporter B family member 4 1033 1288 - -
Vimu11g01993 1292 CDD ABC_6TM_Pgp_ABCB1_D2_like 732 1028 - -
Vimu11g01993 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1043 1279 IPR003439 GO:0005524
Vimu11g01993 1292 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g01993 1292 Pfam ABC transporter 1062 1210 IPR003439 GO:0005524
Vimu11g01993 1292 Pfam ABC transporter 447 595 IPR003439 GO:0005524
Vimu11g01993 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 666 IPR027417 -
Vimu11g01993 1292 Pfam ABC transporter transmembrane region 744 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g01993 1292 Pfam ABC transporter transmembrane region 165 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g01993 1292 SUPERFAMILY ABC transporter transmembrane region 104 406 IPR036640 GO:0005524|GO:0016020
Vimu11g01993 1292 Gene3D - 1033 1292 IPR027417 -
Vimu11g01993 1292 FunFam ABC transporter B family member 19 418 667 - -
Vimu11g01993 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1281 IPR027417 -
Vimu11g01993 1292 CDD ABC_MTABC3_MDL1_MDL2 1043 1278 - -
Vimu11g01993 1292 Gene3D - 418 667 IPR027417 -
Vimu11g01993 1292 PANTHER ABC TRANSPORTER B FAMILY 94 670 IPR039421 -
Vimu11g01993 1292 ProSitePatterns ABC transporters family signature. 567 581 IPR017871 GO:0005524|GO:0016887
Vimu11g01993 1292 SMART AAA_5 1070 1268 IPR003593 GO:0016887
Vimu11g01993 1292 SMART AAA_5 455 649 IPR003593 GO:0016887
Vimu11g01993 1292 ProSitePatterns ABC transporters family signature. 1182 1196 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01993 Vimu-Chr11 31607347 31621892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01993 171 690 Calmodulin-binding Proteins AT2G36910 41.255 5.14e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01993 K05658 - gmx:100809752 2069.66