Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01987 ATGGGTTTCTGTAGCAATGGCAGAGAAGAGAGTGAAATATATCACGCTCAAATCCACCTGTACAAACACGTGTACAACTTCGTGAGCTCTATGGCTCTCAAGTTCGCCATGGAACTAGGCATAGCGGACGCAATCCACAGCCACGGAGAACCCATGACCATTTCTCAGTTAGCCTCTGCACTGAAACTGCACCCTTCAAAACTCTCTGTCCTCCACCGATTCATGCGCCTTTTAACACATAATGGGTTCTTCGCCAAAACAACAGTGGCGTCATATAAAGGAGCAGGAGGAGAAGAAACAGTATATGATCTTACCCCTCCTTCCAAGCTTCTGATCCGAAGCGAGTCAACGTGTTTGGCTCCTATTGTTAAGGGCGCGCTTCATTCGAGTTCCATCGATATGTGGCACTCCTCCAACAAGTGGTTAACTGAGGATAAGGAACTCTCACTGTATGAGAGTGCCAACGGTGAGAGTTTCTGGGAGTTTTTGAACAAAACCACTGAATCTGATACGCTTAACATGTTCCATGAAGCAATGGCAGCAGATTCTAGAATGTTCAAGATGGCTCTGGAAGAGTGCAAGCATGTGTTTGAGGGATTGGGTTCCCTTGTCGATGTGGGAGGTGGAACTGGTGCTGTCACGAGTCTCATCAATGAACTCTTCCCTCACATGAAGTGCACGGTGTTTGATCAACCACAGGTTGTGTCCAACTTGACTGGATCTGAAAATTTGAACTTTGTTGGTGGGGATATGTTCAAATCCATCCCTTCAGCTGATGCAGTTTTACTCAAGTGGGTTCTGCATGATTGGAACGACGAGCTCGCAGTGAAGATATTGAAGAACTGCAAAGACGCTATTTCAGGGAAAGGGAAAGAAGGAAAAGTGATAATTGTAGACATAGCAATTGATGAAGCAACTGATGATAGTGAATTGACAGAGTTGAAGCTGAACTATGACTTGGTGATGCTCACTATGTTGAATGGAAAAGAAAGAGATAGAAAAGAATGGGAGAAACTTATTTACGATGCAGGCTTCAGCAGCTACGACATCACCCCTATATGTGGCTTCAAATCTCTCATCCAACTTTATCCTTAA 1095 0.4466 MGFCSNGREESEIYHAQIHLYKHVYNFVSSMALKFAMELGIADAIHSHGEPMTISQLASALKLHPSKLSVLHRFMRLLTHNGFFAKTTVASYKGAGGEETVYDLTPPSKLLIRSESTCLAPIVKGALHSSSIDMWHSSNKWLTEDKELSLYESANGESFWEFLNKTTESDTLNMFHEAMAADSRMFKMALEECKHVFEGLGSLVDVGGGTGAVTSLINELFPHMKCTVFDQPQVVSNLTGSENLNFVGGDMFKSIPSADAVLLKWVLHDWNDELAVKILKNCKDAISGKGKEGKVIIVDIAIDEATDDSELTELKLNYDLVMLTMLNGKERDRKEWEKLIYDAGFSSYDITPICGFKSLIQLYP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01987 364 Gene3D - 3 111 IPR036388 -
Vimu11g01987 364 SUPERFAMILY "Winged helix" DNA-binding domain 10 115 IPR036390 -
Vimu11g01987 364 Pfam O-methyltransferase domain 135 346 IPR001077 GO:0008171
Vimu11g01987 364 FunFam Coniferyl alcohol 9-O-methyltransferase 4 111 - -
Vimu11g01987 364 CDD AdoMet_MTases 203 302 - -
Vimu11g01987 364 PIRSF O-mtase 4 364 IPR016461 GO:0008168
Vimu11g01987 364 PANTHER O-METHYLTRANSFERASE 16 347 IPR016461 GO:0008168
Vimu11g01987 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 364 IPR016461 GO:0008168
Vimu11g01987 364 Gene3D Vaccinia Virus protein VP39 113 364 IPR029063 -
Vimu11g01987 364 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vimu11g01987 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 360 IPR029063 -
Vimu11g01987 364 FunFam O-methyltransferase ZRP4 114 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01987 Vimu-Chr11 31274297 31275606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01987 28 351 Monolignol Biosynthesis Gene Families AT5G54160 32.927 4.55e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01987 K22588 - gmx:100807589 623.239