Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01976 ATGGCAAGAACTTGCTTCCTCGATTTTGTCGCTTGGGAGCATGAACAGTTTTCAAGGGTGAGAGTTACTACTGCCACTCTATCTGAACTCTCTATAGCACCTAAATTGCTAGAAAAGGTTGGTGGTTTGGTTGACAGCAGGCATTTTGTTAATGAAACAACTTTTGTCAGGAGCGTGAAATTAATTGCTGAAAGTCTTGCGTCAGATTCCTCAGCATCAGACAACTGGTTGAAACTGTGGCTTCGAGACCTTTTCCTACCAGTTTGTGCAATGAGGTCCAAGTTGAGCTGGTTTTTACCAAATGACCATGCCTTTACGAGAAATAGGAATGCTTTCAAAAAGGGGGAAGTGGACATGGAAGACGCGCCACCATATCTCACGGGAACAGAAGTTTGGAATATAGTGAATGGTTATCCTAAAGTAACGGAAAATGGTGCACAAACAATAGATGGATACGGTCAGTGGCATAATTGGACGAAAAAGAGCATCTTTTGGGATCTACCATATTGGAAGGATAATTTGTTAAGGCATAATCTTGATTTCATGCATATTGAGAAGAATTTCTTTGACAACATTTTTAATACCGTGATGAATGTCACTGGGAAGTCAAAAGACAATGAAAAGGCCCGAATGGATATAGGTTTGTATTGTAGACGAAAAGACTTGGAGCTCAAAACTCATACTAATGGAAAGATGTACAAGCCAAAATCTAATTATACACATTCAGTAGACCAATCAAAACAGGTATATCATTGGCTGAAAGATCTTAGGATGCCTAGCGAATATTCTTCTAACTTGTCAAGGTGTGTTGATGTCAATAGGGGAAAGGTGATTGGGATGAAAAGCCATGACTGCCATGTGTTTATGGAATGCTTACTTCCTATTGCGTTTAGTTCTTTACCAGCTCATATTCTAAATCCAATTACAGAAGTCAGTCATTTCTTCAGAGATTTGTGTTCTACGACATTGAATAAGGACGACCTTCAAAAGATGGAAGAAAACATTCCTTTTATACTTTGCAAGATGGAGAGAATATTTCCCCCCTCATTCTTTGATTCTATGGAACATCTCCCTATACATCTTCCATATGAGGCAAGACTTGGTGGACCGGTCCAATATAGGTGGATGTACCCATTCGAAAGGGAATCAACTCATTGGCTAAGTGACGAAGAATTGAGATCAGCTCATGTTCATGTCTTGATCAAATGCAATGAAGTTCAACCTTATCTTGAGACTATAAATAGTGGGGTTCATGTTAAAGGCCTTATAGAAGGGGGTGAAGATGATTTCTATGGTCTTATTAAGCACATATATGAGCTCAAGTACAATACCTCAACCATTGAAAAGAAGATTAATATGGCAACAGGTGGTTGTGACCCTCCTATTCCGCCTTCAGGAAACTCATATAAGGAGAAGGGGAAGAAGAAAGCTTATCCGGTCAAGTTGATGTCCCGTTTCAATAAGGTAAGTACTTCAACTAGTCAACCATCTACACCTACCTCCACTGCTAGATCTGTTCCACCACCATTGGTAATTCCTGGTTTGACACCTACTGCACCATTTATTCAACCTTCATTGGATGTTCCTGCCTTCACACCTAGTCCACAACAACGTGGTGCTGATCAATGGAGATCACCCTCCCCCCATGTTGGTTCTAACCCAACAACTCCTACAAATATTGCACCAACACCTCCTACAGGGGATGGAGTTCCACATTCAAGTTCAGCAGGAAATTTTGAAGATGTTTCCAACAATCGTCCAATCATTACACCTATTGGAGGAGGGTTTTATCCAACAAAAACAGCATCCAAAGCAATCACAGCCACCATTAAAGGACAATTTGATGAGGCATGGGTGACATGGGGACAAATCCCGCAGAGTCGCAGAGATGTTTTCTTTGAGCGTTTTAAGGTACACTTGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAGTGCTTCCTAGTGGTTATCTAATTAGACCCTGTCAAGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATATGGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAATTCTTAGTTTAG 2091 0.4065 MARTCFLDFVAWEHEQFSRVRVTTATLSELSIAPKLLEKVGGLVDSRHFVNETTFVRSVKLIAESLASDSSASDNWLKLWLRDLFLPVCAMRSKLSWFLPNDHAFTRNRNAFKKGEVDMEDAPPYLTGTEVWNIVNGYPKVTENGAQTIDGYGQWHNWTKKSIFWDLPYWKDNLLRHNLDFMHIEKNFFDNIFNTVMNVTGKSKDNEKARMDIGLYCRRKDLELKTHTNGKMYKPKSNYTHSVDQSKQVYHWLKDLRMPSEYSSNLSRCVDVNRGKVIGMKSHDCHVFMECLLPIAFSSLPAHILNPITEVSHFFRDLCSTTLNKDDLQKMEENIPFILCKMERIFPPSFFDSMEHLPIHLPYEARLGGPVQYRWMYPFERESTHWLSDEELRSAHVHVLIKCNEVQPYLETINSGVHVKGLIEGGEDDFYGLIKHIYELKYNTSTIEKKINMATGGCDPPIPPSGNSYKEKGKKKAYPVKLMSRFNKVSTSTSQPSTPTSTARSVPPPLVIPGLTPTAPFIQPSLDVPAFTPSPQQRGADQWRSPSPHVGSNPTTPTNIAPTPPTGDGVPHSSSAGNFEDVSNNRPIITPIGGGFYPTKTASKAITATIKGQFDEAWVTWGQIPQSRRDVFFERFKVHLPPASNFVRAEVLPSGYLIRPCQGGGSIIHIVDHIDMDVWSVPEVLRPLYESSKFLV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01976 696 MobiDBLite consensus disorder prediction 529 557 - -
Vimu11g01976 696 ProSiteProfiles START domain profile. 641 696 IPR002913 GO:0008289
Vimu11g01976 696 PANTHER DUF4218 DOMAIN-CONTAINING PROTEIN-RELATED 98 381 - -
Vimu11g01976 696 SUPERFAMILY Bet v1-like 625 689 - -
Vimu11g01976 696 MobiDBLite consensus disorder prediction 568 585 - -
Vimu11g01976 696 Pfam Domain of unknown function (DUF4218) 318 382 IPR025452 -
Vimu11g01976 696 MobiDBLite consensus disorder prediction 488 505 - -
Vimu11g01976 696 MobiDBLite consensus disorder prediction 488 585 - -
Vimu11g01976 696 Gene3D - 618 692 IPR023393 -
Vimu11g01976 696 Pfam START domain 641 694 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01976 Vimu-Chr11 30859019 30864261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01976 641 696 Homeobox Transcription Factor Family AT2G34710 78.571 1.52e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01976 - - vra:106752505 547.74