Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01971 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGGCAACAACTCTTCTGTCCTGTCCACTGGATGCCAAAGAAGCCCTTATACTCCAGGAAATGAAGAGAAAACTCCAGAACCAAAGTCAAGATGGAATCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTATTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTTCGCCACATCCAAAACTCAAAGAACCACAACACAGAAACACAACCAAACTTACTTTCTCTCTCTCAAATCATACCACCTTCAACCTCATGCTCTTCCTCTTCTGACAAATCCTCCTCAAAAGAATTAGTGCACCCAAATGCCATGTCCTTTGGCTTCTCAAATGTCAATGATGCACTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTACAGTCTCACAACTACAATAACACCGCTTTGCTGCCACCAGCGATCGAGTCTTTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTAATAGTTAACGATACCATCACAACGCATGGGTTTTCTATCCCTCAGTTCTCCAACAATATAATGCAATCTCAACCACAGTGTGAACCAAAGGTTGGACACAGCAGTAGTCTTTTTCTCAACGAGATCATGAACCACGGAACCTTCTCAAAGAAAGACCAAGATCAGGAAAAGGCATTAAAATCAATGCACCGTCAACAACTTAGCTCCCCTCCGACTTCATCTTCAACCACAACCGTTGCTCCCGAAATCTCAACTCTTCCATGTCCAATCACCCAGCTTCAAGGTGTTGGTGGTGAGGTTACAGCAGATAGAGAAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTCGGAGATGAAGCCGTGCTTATCCACTCCTCCGGCCCTGTCCCCACCGATGACTGGGGCATTACTCTCCACCCACTGCAGCATGGTGCTTACTATTATCTGGTCTGGAGTTTCGTTAAACACTGCAACTTTTTTTTCAAACCTTCATTTTAA 1185 0.4473 MSSSNKHWPSMFKSKPCNSHNQWQHGNNSSVLSTGCQRSPYTPGNEEKTPEPKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKNHNTETQPNLLSLSQIIPPSTSCSSSSDKSSSKELVHPNAMSFGFSNVNDALPNSPTASVNQTYLQSHNYNNTALLPPAIESFSFPLHNNGQGVIVNDTITTHGFSIPQFSNNIMQSQPQCEPKVGHSSSLFLNEIMNHGTFSKKDQDQEKALKSMHRQQLSSPPTSSSTTTVAPEISTLPCPITQLQGVGGEVTADREKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHGAYYYLVWSFVKHCNFFFKPSF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01971 394 FunFam WUSCHEL-related homeobox 11 53 120 - -
Vimu11g01971 394 SUPERFAMILY Homeodomain-like 47 117 IPR009057 -
Vimu11g01971 394 CDD homeodomain 52 114 IPR001356 GO:0003677
Vimu11g01971 394 Gene3D - 53 118 - -
Vimu11g01971 394 MobiDBLite consensus disorder prediction 266 296 - -
Vimu11g01971 394 SMART HOX_1 51 118 IPR001356 GO:0003677
Vimu11g01971 394 MobiDBLite consensus disorder prediction 278 296 - -
Vimu11g01971 394 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 380 IPR044557 GO:0003700|GO:0050793
Vimu11g01971 394 MobiDBLite consensus disorder prediction 1 44 - -
Vimu11g01971 394 MobiDBLite consensus disorder prediction 1 60 - -
Vimu11g01971 394 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Vimu11g01971 394 Pfam Homeodomain 53 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01971 Vimu-Chr11 30742435 30744154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01971 1 379 Wox Gene Family AT2G33880 42.080 5.98e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu11g01971 Homeodomain 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01971 - - gmx:100777643 529.25