Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01962 ATGTCTGTACCTTCTTTTGCTTCCACTTCTTTTTCACTACAATTCACTTCTCTCTTTGTGTTCTTCATTTTGAGTCGAACTTTTTGCTTAGCCACACATGCCAACACCACCACACGCCCCCCTCGCCAACTCTCACTAAATTACTATGCCAAATCATGCCCCCAGCTAGAACAGCTTGTTGGTTCAGTCACTTCTCAACAGTTCAAACAATCACCTGTCTCTGCCCCTGCCACCATTCGTCTCCTCTTCCATGATTGCTTTGTCGGGGGGTGTGATGCGTCAATTTTAATAGCATCAAAGGGTGGAAGGAAGGAGTTGGCAGAGAAGGATGCAGAGGATAACAGAGACTTGAAGGTGGAAGGTTTTGAGACAGTGAGAAAAGCTAAGGAACTAGTGGAGAAAAAGTGCCCTGGCGTGGTGTCATGTGCGGATATTCTTGTAATTGCAGCCAGAGATTATGTTCACCTTGCAGGAGGGCCATATTACCCTGTGAAGAAGGGAAGATGGGACGGAAAGATATCAACGGCATCAAGGGTGGCATCAAACATCCCTCGTGCAAACTCGACCGTCGATCAACTCATCAAACTGTTCAATACGAAGGGCCTAACCACACGGGACCTGGTGGCCCTATCAGGGGCCCACACAATTGGGTTTGCGCATTGCAAGAACTTCGTGGCTCGTCTCTACAGTTACCGAGGCAAGGGCCAACCGGACCCAGACATGGACCCCAAACTCCTACACGCACTTAGAATGTACTGTCCAAACTTCGGTGGAAACTCCGACATCGTTGCCCCTTTTGATGCCACTACGCCTTTCTTGTTTGACCATGCCTATTATGGCAACTTGCAACAAAAGATGGGCTTGTTGGCCTCTGACCAGGCTCTGGCCTTCGACCCACGAACCAAGCCTATTGTCCTAGAATTTGCCAAGGATAACCACAACTTTTTCCAAGCTTTTGTCGCAGCCATGGACAAATTGAGCTTAATCAAAGTCGTACGAGGGGCAAGGCACGGGGAGAAACGTAGAGATTGTAGCATGCACACGTGA 1047 0.4871 MSVPSFASTSFSLQFTSLFVFFILSRTFCLATHANTTTRPPRQLSLNYYAKSCPQLEQLVGSVTSQQFKQSPVSAPATIRLLFHDCFVGGCDASILIASKGGRKELAEKDAEDNRDLKVEGFETVRKAKELVEKKCPGVVSCADILVIAARDYVHLAGGPYYPVKKGRWDGKISTASRVASNIPRANSTVDQLIKLFNTKGLTTRDLVALSGAHTIGFAHCKNFVARLYSYRGKGQPDPDMDPKLLHALRMYCPNFGGNSDIVAPFDATTPFLFDHAYYGNLQQKMGLLASDQALAFDPRTKPIVLEFAKDNHNFFQAFVAAMDKLSLIKVVRGARHGEKRRDCSMHT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01962 348 Gene3D - 47 346 - -
Vimu11g01962 348 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
Vimu11g01962 348 CDD secretory_peroxidase 43 345 IPR033905 GO:0004601|GO:0042744
Vimu11g01962 348 ProSiteProfiles Plant heme peroxidase family profile. 43 348 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PANTHER - 34 346 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 281 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 265 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 53 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 77 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 Pfam Peroxidase 63 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 FunFam Peroxidase 47 194 - -
Vimu11g01962 348 PRINTS Haem peroxidase superfamily signature 75 89 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 PRINTS Haem peroxidase superfamily signature 267 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 ProSitePatterns Peroxidases active site signature. 75 86 IPR019794 GO:0004601
Vimu11g01962 348 SUPERFAMILY Heme-dependent peroxidases 43 346 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu11g01962 348 Gene3D Peroxidase, domain 2 184 326 - -
Vimu11g01962 348 FunFam Peroxidase 184 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01962 Vimu-Chr11 30638814 30642108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01962 11 344 Peroxidase AT2G34060 61.947 1.04e-157 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01962 K00430 - gmx:100777463 596.275