Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01958 AAAATGAATTTCCCGTCAAAAAATCCTCTAGCACTCCCAACAATTTGGCTCTCCTATTTTTTACTCCTTTCCTTTGTTCTCATTACATGTTGCCAAGTTGAGGCTACAGATGGAGACAGTAAAGTCATATCTGTAGGTGCAATAATTGATGTTAACTCCCGCATTGGGAAAGAACAGCTTGTTGCTATGGAACTTGCAGCTCAAAGTTATAATACCACTTCTAACACCTACAAGCTGCTTCTTCAATTTCAGCTTCCCACCAAGGATCCCTTCATACCCACTTCCTTTGCTAGAAGAATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGAAATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGTAAATCTCAAGTTCCTGTCATATCCTTTGCAGCTCCTTCCATTAGCCCATCACTGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCTCACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTTTAGTTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGACTATGAGATGCTAGCACTGCTATCAGAGACCCTCCAAGATGTTGGTTCACAGATCGAGTATCGTTTGGCTCTTCCATCTCCTCCTTATCTTTCTAATCCTAGAGAATTCATTCGCCAAGAGTTGCTCAAGGTGACTGAAAATACACAGTCCAGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGATGGAGAATCAGCTTGGATAATCCCAGAGAGCACAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGCAAGGAGCTTTAGGAATCAAGACGTACTACTCTGAACGTAGCAGTGAATATCAAAATTTTGAGGCTCGGTTCAGAAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTCTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAGAATGGCGTGTGGCAGAAAGAGTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCAGAATCCCACTTTCATGATTGTTAATGTAGATACAAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGTGGGTTCATGAGTAGCCTTCCTACAGGACAAGGTTCAGAGAGTGTTTCTAGGAACACACAAAGTTTAAGTGGCATTGTAATATGGCCAGGGAAACTATCAAGAATTCCAAAGGGCTGGAATCTGCTTACTAAACAAAAACCAATGAGAATAGCAGTTCCTGGAAGAACCTCCTTTTCCAAGTTTGTCAAGGTTGATCATGACAAACTTACAAATTCATCTAAGTACACCGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTATTGGGATATGACCTGCCATATGACTTCCATCCCGTGAATGCAACCTATCCTGATCTGGTACAACTGGTCTATAATAAGACTTATGATGCTGTTGTTGGAGACGTGACGATATTAGAAGAAAGATTGCAATATGTAGATTTTACGGTGCCATATGCAGAATCGGGCTTGTCAATGATAGTTACGGAGAATGTTGCAGGGGAGAAAATTTATAGTGACTTAACTCGAGTGGTGATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGATATTGAGTTTCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGTGACTCGTTTGTTAAGGCATACCTAGAGGAAGTCGAAGACTTCAAGCCAGAGAACATCGTACACATTAATAATGAATATAGTTATGACGGTGCATTCAAAAATAACTCAATAGCAGCTGCTTTTCTCGAACTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGGAGGTCTGGGATTTATGTTCCAGAAAGGCTCCCCAGTGGCCAGAGACTTTTCCAGAGCTATACTGAGGCTCTTAGAGCAGGGAGACATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGAGTGCTCAAACAATTCGACCTCTGAGAGCTCAGAAAGTTTGAGGCTCGGAAGTTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTCTACACCATCCAGTCGCGGAATTCCAGTCACACATCCCAAGATGAGGCAGAAGAACGTAACGGCAACCTTAGTGATGAAAGCCGATGGAAAAGGATGTTTGTTATAGCCAGGCAGATCTACACCAGAAAGCATGCATCACTTACACACGACCATCAGCAGGCTATGGCTCCACAATTACCAGATATCATAATGGTATCTTCCACACCAACGGTTACTATTCAAAACTGTTGA 2529 0.4164 KMNFPSKNPLALPTIWLSYFLLLSFVLITCCQVEATDGDSKVISVGAIIDVNSRIGKEQLVAMELAAQSYNTTSNTYKLLLQFQLPTKDPFIPTSFARRMIKTQKMQVIIGMQKWTEAASVAELGRKSQVPVISFAAPSISPSLMPIRWPSLVRMAHNGTAYAKCVADMVHAFSWQRVVVIYEDGDYEMLALLSETLQDVGSQIEYRLALPSPPYLSNPREFIRQELLKVTENTQSRVFIVLQSSLEMVIHLFREASEMGLVDGESAWIIPESTTNLLDSVNKSAISYMQGALGIKTYYSERSSEYQNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDRMACGRKSLLREILSSNFVGLSGEIRFEEAQLLQNPTFMIVNVDTKSYRELDFWTPEGGFMSSLPTGQGSESVSRNTQSLSGIVIWPGKLSRIPKGWNLLTKQKPMRIAVPGRTSFSKFVKVDHDKLTNSSKYTGFCIEIFEKALPLLGYDLPYDFHPVNATYPDLVQLVYNKTYDAVVGDVTILEERLQYVDFTVPYAESGLSMIVTENVAGEKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEFLKKNNMKIGCDGDSFVKAYLEEVEDFKPENIVHINNEYSYDGAFKNNSIAAAFLELPYEKVYMSKYCKGYSAFVPTTKFGGLGFMFQKGSPVARDFSRAILRLLEQGDIKKLEDKWLNSADECSNNSTSESSESLRLGSFWVLYVISGATSTICFLLYTIQSRNSSHTSQDEAEERNGNLSDESRWKRMFVIARQIYTRKHASLTHDHQQAMAPQLPDIIMVSSTPTVTIQNC 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01958 842 Pfam Ligand-gated ion channel 728 757 IPR001320 GO:0015276|GO:0016020
Vimu11g01958 842 SUPERFAMILY Periplasmic binding protein-like I 40 445 IPR028082 -
Vimu11g01958 842 CDD PBP1_GABAb_receptor_plant 44 412 IPR044440 -
Vimu11g01958 842 FunFam Glutamate receptor 162 327 - -
Vimu11g01958 842 CDD GluR_Plant 452 726 - -
Vimu11g01958 842 Pfam Bacterial extracellular solute-binding proteins, family 3 478 727 IPR001638 -
Vimu11g01958 842 Gene3D - 49 384 - -
Vimu11g01958 842 PIRSF IGluLR_plant 14 356 IPR017103 -
Vimu11g01958 842 PIRSF IGluLR_plant 349 563 IPR017103 -
Vimu11g01958 842 PIRSF IGluLR_plant 557 829 IPR017103 -
Vimu11g01958 842 Gene3D - 158 404 - -
Vimu11g01958 842 Gene3D - 601 695 - -
Vimu11g01958 842 SUPERFAMILY Periplasmic binding protein-like II 429 727 - -
Vimu11g01958 842 FunFam Glutamate receptor 453 564 - -
Vimu11g01958 842 Pfam Receptor family ligand binding region 61 392 IPR001828 -
Vimu11g01958 842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 557 IPR015683 -
Vimu11g01958 842 SMART AABind_6 453 729 IPR001638 -
Vimu11g01958 842 SMART GluR_14 455 728 IPR001320 GO:0015276|GO:0016020
Vimu11g01958 842 Gene3D - 448 569 - -
Vimu11g01958 842 Gene3D - 696 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01958 Vimu-Chr11 30517486 30521012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01958 95 792 Ion Channels AT5G11210 27.961 1.02e-86 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01958 - - gmx:100780320 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01958 11 30517486 30521012 Vimu11g01958 11 30517486 30521012 ECH